API for lculibrk/Ploidetect
Ploidetect - Detection of tumour purity, aneuploidy, and copy number variation from whole genome sequnce data
| Global functions | |
|---|---|
| callbreakpoints | Source code |
| centromeres | Man page |
| compressdata | Source code |
| compressdata_prob | Source code |
| compute_responsibilities | Man page |
| cosine_sim | Man page |
| curate_segments | Man page |
| depth | Man page |
| flip_merged_mafs | Source code |
| get_coverage_characteristics | Source code |
| get_good_var | Source code |
| gmm_em_fixed_var | Man page |
| gmm_em_only_var | Man page |
| gmm_mad | Man page Source code |
| load_ploidetect_data | Man page Source code |
| maf_gmm_fit | Man page |
| map_noisy_segments | Man page |
| match_kde_height | Man page |
| merge_mafs | Source code |
| mixpdf | Man page |
| mixpdf_function | Man page |
| n50_segments | Man page |
| norm_lik | Man page Source code |
| normpdf | Man page Source code |
| parametric_gmm_fit | Man page Source code |
| ploidetect | Source code |
| ploidetect_cna | Source code |
| ploidetect_fineCNAs | Source code Source code |
| ploidetect_loh | Source code |
| ploidetect_preprocess | Source code |
| ploidetect_presegment | Source code |
| ploidetect_prob_segmentator | Source code |
| ploidetect_resegment | Source code |
| ploidetect_segmentator | Source code |
| plot_ploidetect | Man page Source code |
| props | Man page |
| read_ploidetect | Source code |
| rms | Man page |
| runiterativecompression | Source code |
| runiterativecompression_prob | Source code |
| table_vec | Man page |
| testMAF | Source code |
| testMAF_sc | Source code |
| tp_diffploidy | Man page |
| unmerge_mafs | Source code |
| unmerge_mafs_grouped | Source code |
| view_segments | Man page |
| zt | Man page Source code |
| zt_p | Man page Source code |
