view_segments: Produce ploidetect-style plots for a copy number profile at...
In lculibrk/Ploidetect: Ploidetect - Detection of tumour purity, aneuploidy, and copy number variation from whole genome sequnce data
view_segments R Documentation
Produce ploidetect-style plots for a copy number profile at the given chromosome and positions
Description
view_segments is a wrapper for plot_ploidetect to make filtering for specific regions simple
Usage
view_segments(cna, chrom, plot_pos, plot_end)
Arguments
cna
a data.table containing the bin-level copy number calls
chrom
the chromosome of interest
plot_pos
the start position of the plot
plot_end
the end position of the plot
Value
a ggplot2 plot
lculibrk/Ploidetect documentation built on May 18, 2023, 5:53 p.m.
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| view_segments | R Documentation |
Produce ploidetect-style plots for a copy number profile at the given chromosome and positions
Description
view_segments is a wrapper for plot_ploidetect to make filtering for specific regions simple
Usage
view_segments(cna, chrom, plot_pos, plot_end)
Arguments
cna |
a data.table containing the bin-level copy number calls |
chrom |
the chromosome of interest |
plot_pos |
the start position of the plot |
plot_end |
the end position of the plot |
Value
a ggplot2 plot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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