Files in lculibrk/Ploidetect

Ploidetect - Detection of tumour purity, aneuploidy, and copy number variation from whole genome sequnce data

R/Ploidetect_refineCNAs.R R/callbreakponts.R R/centromeres.R R/compressdata.R R/coverage_char.R R/helper_functions.R R/merge_mafs.R R/misc_functions.R R/ploidetect.R R/ploidetect_loh.R R/ploidetect_preprocess.R R/ploidetect_segmentator.R R/probabilistic_segmentation.R R/read_ploidetect.R R/runiterativecompression.R R/testmaf.R README.md inst/plot_regions.R man/centromeres.Rd man/compute_responsibilities.Rd man/cosine_sim.Rd man/curate_segments.Rd man/depth.Rd man/gmm_em_fixed_var.Rd man/gmm_em_only_var.Rd man/gmm_mad.Rd man/load_ploidetect_data.Rd man/maf_gmm_fit.Rd man/map_noisy_segments.Rd man/match_kde_height.Rd man/mixpdf.Rd man/mixpdf_function.Rd man/n50_segments.Rd man/norm_lik.Rd man/normpdf.Rd man/parametric_gmm_fit.Rd man/plot_ploidetect.Rd man/props.Rd man/rms.Rd man/table_vec.Rd man/tp_diffploidy.Rd man/view_segments.Rd man/zt.Rd man/zt_p.Rd