read_microbiome_data: Microbiome data input
In lcw68/jointImpute: What the Package Does (One Line, Title Case)
Description
Usage
Arguments
Value
Examples
Description
Reads a file in list format and eliminate invalid taxa and samples (preprocessing)
Usage
1
read_microbiome_data(file, eliminate_taxa_threshold = 0)
Arguments
file
the name of the file which the data are to be read from. Data should be in list format with three dimensions: otu, taxa and meta.
eliminate_taxa_threshold
threshold for deciding unexpressed level to be elminated
Value
A list of microbiome data after preprocessing
Examples
1
humann_2 <- read_microbiome_data("data.bactRPK.marginal.DRNA.ZOE2.rds",eliminate_taxa_threshold=0.1)
lcw68/jointImpute documentation built on Dec. 21, 2021, 9:46 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Reads a file in list format and eliminate invalid taxa and samples (preprocessing)
Usage
1 | read_microbiome_data(file, eliminate_taxa_threshold = 0)
|
Arguments
file |
the name of the file which the data are to be read from. Data should be in list format with three dimensions: otu, taxa and meta. |
eliminate_taxa_threshold |
threshold for deciding unexpressed level to be elminated |
Value
A list of microbiome data after preprocessing
Examples
1 | humann_2 <- read_microbiome_data("data.bactRPK.marginal.DRNA.ZOE2.rds",eliminate_taxa_threshold=0.1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.