TBclustr-package: TBclustr: Estimate reproductive numbers for tuberculosis from...
In ldanon/TBclustr: What the Package Does in One 'Title Case' Line

Description Details Author(s) References Examples

This package implements a model of importation and transmission of tuberculosis (TB) in a host population described in xxx paper. Importation of new cases is modelled as a poisson process, and the within-country transmission is modelled as a branching process with a given distribution of the number of offspring. Two types of distributions for secondary cases are considered: a negative binomial distribution and a log-normal distribution. The model is fitted to input data using EasyABC importation rate and within-population transmission rate to data specified in the cluster size file.

modelstats function defines the branching process model.

Leon Danon, l.danon@exeter.ac.uk Ellen Brooks-Pollock, ellen.brooks-pollock@bristol.ac.uk Maintainer: Leon Danon <l.danon@exeter.ac.uk>

Brooks-Pollock et. al. in preparation, 2018.

  ## Not run: 
     ## Optional simple examples of the most important functions
     ## These can be in \dontrun{} and \donttest{} blocks.   
  
## End(Not run)

ldanon/TBclustr documentation built on May 14, 2019, 10:35 a.m.