This repo includes all data, code, results of data analysis, and documents related to my_project.
project
|- README.md # the top level description of content (this doc)
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|- submission/
| |- manuscript.Rmd # executable Rmarkdown for this study
| |- manuscript.md # Markdown (GitHub) version of the *.Rmd file
| |- manuscript.tex # TeX version of *.Rmd file (for journal submission)
| |- manuscript.pdf # PDF version of *.Rmd file
| |- manuscript.doc # doc version of *.Rmd file (for discussion with Sensei)
| |- header.tex # LaTeX header file to format pdf version of manuscript
| |- references.bib # BibTeX formatted references
| |- XXXX.csl # csl file to format references for journal XXX
|
|- data # raw and primary data, are not changed once created
| |- raw/ # raw data, will not be altered
| +- process/ # cleaned data, will not be altered once created
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|- code/ # any programmatic code
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|- results # all output from workflows and analyses
| |- tables/ # text version of tables to be rendered with kable in R
| |- figures/ # graphs, likely designated for manuscript figures
| +- pictures/ # diagrams, images, and other non-graph graphics
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|- exploratory/ # exploratory data analysis for study
| |- notebook/ # preliminary data analyses
| |- text/ # all information related to journal, meeting, outline, etc.
| +- scratch/ # temporary files that can be safely deleted or lost
|
+- Makefile # executable Makefile for this study
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