ggmanh_annotation_gds: gnomAD Variant Annotation in SeqArray Format

ggmanh_annotation_gdsR Documentation

gnomAD Variant Annotation in SeqArray Format

Description

ggmanh provides a GDS file whose path is accessible by default_gds_path. The original annotation file is from the gnomAD browser v2.1.1 release, available in this link: https://gnomad.broadinstitute.org/downloads. This gds file contains variants in the exome with the global minor allele frequency \ge 0.0002, and has been manually curated to fit the file size requirement for R Bioconductor packages.

Format

A GDS file with 1015430 variants with chromosome, position, allele, gene symbol, Ensembl VEP Consequence, and predicted LoF.


leejs-abv/ggmanh documentation built on Sept. 19, 2024, 10:13 p.m.