ChromSets: Gene-sets from Subramanian et al. study

In leekgroup/Set: Decision-theoretic approach to gene-set analysis

Description

List of gene-sets used in Subramanian et al. study, representing chromosomal regions. 40 of the original 212 were excluded, in order to obtain non-overlapping sets (atoms.)

Usage

data(ChromSets)

Format

List of gene-sets, with the names representing the set names and the entries representing the vector of genes in each set.

References

Subramanian, A., P. Tamayo, V. Mootha, S. Mukherjee, B. Ebert, M. Gillette, A. Paulovich, S. Pomeroy, T. Golub, E. Lander, et al. (2005): Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles, Proceedings of the National Academy of Sciences, 102, 15545-5550.

leekgroup/Set documentation built on May 20, 2019, 11:30 p.m.