README.md

In leekgroup/enrichedRanges: Identify if a set of regions are enriched or not

enrichedRanges

Identify enrichment between two sets of genomic ranges.

Installation instructions

Get R 3.1 or newer from CRAN.

## If needed
install.packages("devtools")

## Pre-requisites from Bioconductor
install.packages("BiocManager")
BiocManager::install(c("biovizBase", "GenomicRanges", "seqbias"))

## enrichedRanges
library("devtools")
install_github("leekgroup/enrichedRanges")

Citation

Below is the citation output from using citation("enrichedRanges") in R. Please run this yourself to check for any updates on how to cite enrichedRanges.

To cite package enrichedRanges in publications use:

Leonardo Collado-Torres and Andrew Jaffe (2014). enrichedRanges: Identify enrichment between two sets of genomic ranges. R package version 0.0.2.

A BibTeX entry for LaTeX users is

@Manual{,
    title = {enrichedRanges: Identify enrichment between two sets of genomic ranges},
    author = {Leonardo Collado-Torres and Andrew Jaffe},
    note = {R package version 0.0.2},
}

Travis CI

This package is automatically tested thanks to Travis CI and r-travis. If you want to add this to your own package use:

## Use devtools to create the .travis.yml file
library('devtools')
use_travis('yourPackage')

## Read https://github.com/craigcitro/r-travis/wiki to configure .travis.yml appropriately

## Add a status image by following the info at http://docs.travis-ci.com/user/status-images/

leekgroup/enrichedRanges documentation built on June 6, 2019, 7:37 a.m.