iECAT.SSD.All: Integrating External Controls to Association Tests

Description Usage Arguments Details Value Author(s)

View source: R/iECAT_SSD.R

Description

Iteratively carry out association tests with phenotypes and SNP sets in SSD file.

Usage

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	iECAT.SSD.All(EC.INFO, obj, ..., obj.SNPWeight=NULL)

 

Arguments

EC.INFO

EC_INFO object returned from Open_SSD_wEC.

obj

output object from SKAT_Null_Model.

...

further arguments to be passed to “iECAT”.

obj.SNPWeight

output object from Read_SNP_WeightFile (default=NULL). If NULL, the beta weight with the “weights.beta” parameter will be used.

Details

Please see iECAT for details.

Value

results

dataframe that contains SetID, p-values (P.value, P.value.Noadj, and P.value.Internal), the number of markers in the SNP sets (N.Marker.All), and the number of markers to test for associations (N.Marker.Test).

P.value.Resampling

currently resampling p-values are not provided.

Author(s)

Seunggeun Lee


leeshawn/iECAT documentation built on Oct. 10, 2020, 3:29 p.m.