ExportPhenotypes: ExportPhenotypes

In legenepi/exceed-pipelines: Reusable pipelines for the EXCEED study

ExportPhenotypes

Description

ExportPhenotypes class

Format

An R6 class object.

Details

Export phenotypes defined by Leicester GenEpi group.

Super classes

exceedapi::SnapshotBackend -> exceedapi::API -> exceedapi::Step -> exceed.pipelines::ExportTable -> ExportPhenotypes

Methods

Public methods

• ExportPhenotypes$transform()

• ExportPhenotypes$prepare_metadata()

• ExportPhenotypes$prepare_dataset()

• ExportPhenotypes$clone()

Inherited methods

• exceedapi::Step$add_step()

• exceedapi::Step$add_step_object()

• exceedapi::Step$initialize()

• exceedapi::Step$inverse_transform()

• exceedapi::Step$progress_bar()

• exceedapi::Step$run()

• exceed.pipelines::ExportTable$add_prefix()

• exceed.pipelines::ExportTable$add_shared_metadata()

• exceed.pipelines::ExportTable$alert_danger()

• exceed.pipelines::ExportTable$alert_warning()

• exceed.pipelines::ExportTable$check_study_id_range()

• exceed.pipelines::ExportTable$get_field_type_overrides()

• exceed.pipelines::ExportTable$get_fields()

• exceed.pipelines::ExportTable$verify_table()

• exceed.pipelines::ExportTable$write_dataset()

• exceed.pipelines::ExportTable$write_metadata()

• exceed.pipelines::ExportTable$write_table()

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Method transform()

Usage

ExportPhenotypes$transform(...)

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Method prepare_metadata()

Usage

ExportPhenotypes$prepare_metadata()

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Method prepare_dataset()

Usage

ExportPhenotypes$prepare_dataset(metadata)

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Method clone()

The objects of this class are cloneable with this method.

Usage

ExportPhenotypes$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

legenepi/exceed-pipelines documentation built on Oct. 22, 2024, 7:48 p.m.