ApplyLulu: ApplyLulu

In leholman/metabarTOAD: A group of simple functions for handling metabarcoding data

ApplyLulu

Description

This function automates the lulu algorithm on a user supplied set of sequences and sample-OTU mapping.

Usage

ApplyLulu(seqs, table, output, vsearchdest = "vsearch")

Arguments

seqs	The location of a FASTA file containing sequences used in the generation of the OTU-sample table.
table	The location of a .csv sample table to be used for lulu OTU pruning. Must contain the same OTU name as the supplied FASTA seqs.
output	An output file location and name for the lulu pruned OTU-sample table .csv file.
vsearchdest	Specify the location of the vsearch executable if PATH not configured appropriately.

Value

None

leholman/metabarTOAD documentation built on Aug. 27, 2023, 9:07 p.m.