Tools for Evolutionary Quantitative Genetics

AlphaRep | Alpha Repetability |

BayesianCalculateMatrix | Calculate Covariance Matrix from a linear model fitted with... |

BootstrapR2 | R2 confidence intervals by bootstrap resampling |

BootstrapRep | Bootstrap analysis via resampling |

BootstrapStat | Non-Parametric population samples and statistic comparison |

CalcAVG | Calculates mean correlations within- and between-modules |

CalcICV | Calculates the ICV of a covariance matrix. |

CalcR2 | Mean Squared Correlations |

CalcR2CvCorrected | Corrected integration value |

CalcRepeatability | Parametric per trait Repeatabilities |

CalculateMatrix | Calculate Covariance Matrix from a linear model fitted with... |

ComparisonMap | Generic Comparison Map functions for creating parallel list... |

CreateHypotMatrix | Creates binary correlation matrices |

DeltaZCorr | Compare matrices via the correlation between response vectors |

dentus | Example multivariate data set |

dentus.tree | Tree for dentus example species |

DriftTest | Test drift hypothesis |

EigenTensorDecomposition | Eigentensor Decomposition |

evolqg | EvolQG |

ExtendMatrix | Control Inverse matrix noise with Extension |

KrzCor | Compare matrices via Krzanowski Correlation |

KrzProjection | Compare matrices via Modified Krzanowski Correlation |

KrzSubspace | Krzanowski common subspaces analysis |

LModularity | L Modularity |

MantelCor | Compare matrices via Mantel Correlation |

MantelModTest | Test single modularity hypothesis using Mantel correlation |

MatrixCompare | Matrix Compare |

MatrixDistance | Matrix distance |

MeanMatrix | Mean Covariance Matrix |

MeanMatrixStatistics | Calculate mean values for various matrix statistics |

MINT | Modularity and integration analysis tool |

MonteCarloR2 | R2 confidence intervals by parametric sampling |

MonteCarloRep | Parametric repeatabilities with covariance or correlation... |

MonteCarloStat | Parametric population samples with covariance or correlation... |

MultiMahalanobis | Calculate Mahalonabis distance for many vectors |

MultivDriftTest | Multivariate genetic drift test for 2 populations |

Normalize | Normalize and Norm |

OverlapDist | Distribution overlap distance |

PCAsimilarity | Compare matrices using PCA similarity factor |

PCScoreCorrelation | PC Score Correlation Test |

PhyloCompare | Compares sister groups |

PhyloMantel | Mantel test with phylogenetic permutations |

PhyloW | Calculates ancestral states of some statistic |

PlotRarefaction | Plot Rarefaction analysis |

PlotTreeDriftTest | Plot results from TreeDriftTest |

PrintMatrix | Print Matrix to file |

ProjectMatrix | Project Covariance Matrix |

RandCorr | Random correlation matrix |

RandomMatrix | Random matrices for tests |

RandomSkewers | Compare matrices via RandomSkewers |

Rarefaction | Rarefaction analysis via ressampling |

RarefactionStat | Non-Parametric rarefacted population samples and statistic... |

RelativeEigenanalysis | Relative Eigenanalysis |

RemoveSize | Remove Size Variation |

RevertMatrix | Revert Matrix |

RiemannDist | Matrix Riemann distance |

RSProjection | Random Skewers projection |

SingleComparisonMap | Generic Single Comparison Map functions for creating parallel... |

SRD | Compare matrices via Selection Response Decomposition |

TestModularity | Test modularity hypothesis |

TreeDriftTest | Drift test along phylogeny |

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