createTransition: Generate transition matrix

In lemdt/CovidShinyModel:

Description

This function creates the Markov transition matrix using the transition probabilties. This transition matrix will be used in the Markov model, as diagramed here: https://drive.google.com/file/d/1_A3Q6C46z4hx02ayqVPhbWuIWFy6Y8ln/view?usp=sharing

Usage

createTransition(p.g_g, p.g_icu, p.g_d, p.icu_g, p.icu_icu, p.icu_v,
  p.v_icu, p.v_v, p.v_m, p.g_m = 0, p.icu_m = 0)

Arguments

p.g_g	Numeric. Transition probability from G -> G state.
p.g_icu	Numeric. Transition probability from G -> ICU state.
p.g_d	Numeric. Transition probability from G -> D state.
p.icu_g	Numeric. Transition probability from ICU -> G state.
p.icu_icu	Numeric. Transition probability from ICU -> ICU state.
p.icu_v	Numeric. Transition probability from ICU -> V state
p.v_icu	Numeric. Transition probability from V -> ICU state.
p.v_v	Numeric. Transition probability from V -> V state.
p.v_m	Numeric. Transition probability from V -> M state.
p.g_m	Numeric. Transition probability from G -> M state.
p.icu_m	Numeric. Transition probability from ICU -> M state.

Value

Transition matrix, to be used in the update step of the Markov model.

lemdt/CovidShinyModel documentation built on May 10, 2020, 1:54 p.m.