phenability-package: Nonparametric Stability Analysis
In leocbc/phenability: Nonparametric Stability Analysis
Description
Arguments
Details
Author(s)
References
Examples
Description
An alternative to carrying out phenotypic adaptability and stability analysis, taking into account nonparametric statistics. Can be used as a robust approach, and less sensitive to departures from common genotypic, environmental, and GxE effects data assumptions (e.g., normal distribution of errors).
Arguments
function
nahu, kang, fox, or thsu
data
A numeric data.frame with fenotypic means values of MET, and genotypes and environments by rows and columns, respectively.
interaction
do a interaction plot or not (FALSE = no interaction plot output, TRUE = draws a interaction plot between genotypes and environments).
Details
Package: phenability
Type: Package
Version: 2.0
Date: 2015-02-24
License: GPU-3
The package can be applied to MET (multienvironment trials) data containing the phenotypic mean of genotype x environment (dataframe with genotypes by rows and environments into columns) and performs nonparametric analysis according to for criteria: H<c3><bc>hn (1979), and Nassar and H<c3><bc>hn (1987); Kang's (1988); Fox et al. (1990) and; Thennarasu's (1995).
Author(s)
Leonardo Castelo Branco
Maintainer: Leonardo C. Branco <leonardocb@usp.br>
References
Fox, P.N., B. Skovmand, B.K. Thompson, H.J. Braun, and R. Cormier.
1990. Yield and adaptation of hexaploid spring triticale. Euphytica
47:57.
H<c3><bc>hn, V.M. 1979. Beitrage zur erfassung der phanotypischen
stabilitat. EDV Med. Biol. 10:112.
Kang, M.S. 1988. A ranksum method for selecting high yielding,
stable corn genotypes. Cereal Res. Comm. 16:113.
Lin, C.S., and M.R. Binns. 1994. Concepts and methods for analyzing
regional trial data for cultivar and location selection. Plant Breed.
Rev. 12:271.
Lin, C.S., M.R. Binns, and L.P. Lefkovitch. 1986. Stability analysis:
Where do we stand? Crop Sci. 26:894.
Nassar, R., and M. H<c3><bc>hn. 1987. Studies on estimation of phenotypic
stability: Tests of significance for nonparametric measures of
phenotypic stability. Biometrics 43:45.
Shukla, G.K. 1972. Some aspects of partitioning genotype environmental
components of variability. Heredity 28:237.
Thennarasu, K. 1995. On certain nonparametric procedures for
studying genotype x environment interactions and yield stability.
Ph.D. thesis. P.J. School, IARI, New Delhi, India.
Examples
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
require(phenability)
data(bean.data)
bean.data
x <- bean.data
fox(x)
fox(x, interaction=TRUE)
kang(x)
kang(x, interaction=TRUE)
thsu(x)
thsu(x, interaction=TRUE)
nahu(x)
nahu(x, interaction=TRUE)
leocbc/phenability documentation built on May 21, 2019, 4:07 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Arguments Details Author(s) References Examples
Description
An alternative to carrying out phenotypic adaptability and stability analysis, taking into account nonparametric statistics. Can be used as a robust approach, and less sensitive to departures from common genotypic, environmental, and GxE effects data assumptions (e.g., normal distribution of errors).
Arguments
function |
nahu, kang, fox, or thsu |
data |
A numeric data.frame with fenotypic means values of MET, and genotypes and environments by rows and columns, respectively. |
interaction |
do a interaction plot or not (FALSE = no interaction plot output, TRUE = draws a interaction plot between genotypes and environments). |
Details
| Package: | phenability |
| Type: | Package |
| Version: | 2.0 |
| Date: | 2015-02-24 |
| License: | GPU-3 |
The package can be applied to MET (multienvironment trials) data containing the phenotypic mean of genotype x environment (dataframe with genotypes by rows and environments into columns) and performs nonparametric analysis according to for criteria: H<c3><bc>hn (1979), and Nassar and H<c3><bc>hn (1987); Kang's (1988); Fox et al. (1990) and; Thennarasu's (1995).
Author(s)
Leonardo Castelo Branco
Maintainer: Leonardo C. Branco <leonardocb@usp.br>
References
Fox, P.N., B. Skovmand, B.K. Thompson, H.J. Braun, and R. Cormier.
1990. Yield and adaptation of hexaploid spring triticale. Euphytica
47:57.
H<c3><bc>hn, V.M. 1979. Beitrage zur erfassung der phanotypischen
stabilitat. EDV Med. Biol. 10:112.
Kang, M.S. 1988. A ranksum method for selecting high yielding,
stable corn genotypes. Cereal Res. Comm. 16:113.
Lin, C.S., and M.R. Binns. 1994. Concepts and methods for analyzing
regional trial data for cultivar and location selection. Plant Breed.
Rev. 12:271.
Lin, C.S., M.R. Binns, and L.P. Lefkovitch. 1986. Stability analysis:
Where do we stand? Crop Sci. 26:894.
Nassar, R., and M. H<c3><bc>hn. 1987. Studies on estimation of phenotypic
stability: Tests of significance for nonparametric measures of
phenotypic stability. Biometrics 43:45.
Shukla, G.K. 1972. Some aspects of partitioning genotype environmental
components of variability. Heredity 28:237.
Thennarasu, K. 1995. On certain nonparametric procedures for studying genotype x environment interactions and yield stability. Ph.D. thesis. P.J. School, IARI, New Delhi, India.
Examples
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 | require(phenability)
data(bean.data)
bean.data
x <- bean.data
fox(x)
fox(x, interaction=TRUE)
kang(x)
kang(x, interaction=TRUE)
thsu(x)
thsu(x, interaction=TRUE)
nahu(x)
nahu(x, interaction=TRUE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.