copy_alf_outputs: Generate bash script for copying ALFRESCO maps

In leonawicz/alfresco: R Functions For ALFRESCO Wildfire Model

Description

Generate bash script for copying ALFRESCO map outputs from one file system location to another.

Usage

copy_alf_outputs(project, in_dir, out_dir = alfdef()$alf_extract_dir,
  file = "copy_alf_outputs.sh", domain = "akcan1km",
  cru_id = "CRU32")

Arguments

project	character, a (new) name for the project, not required to match anything in source data directories.
in_dir	input directory, the parent directory above model (GCM/RCP) run subdirectories.
out_dir	output directory.
file	name of shell script.
domain	character, the ALFRESCO run spatial domain, either "akcan1km" or "ak1km".
cru_id	character, label for CRU data. Defaults to "CRU 3.2".

Details

This function is used for generating a bash script that is used for making a copy of a subset of ALFRESCO geotiff map outputs for subsequent analyses. The historical and projected periods (years subsets) are inferred from the choice of ALFRESCO spatial domain. The file copy process adjusts the new file path structure, creates more consistency, and limits the number of geotiffs to only the required ones. This means not only limiting to standard year ranges but also retaining only fire scar, vegetation type and vegetation age maps. The bash script itself is run on SNAP's Atlas cluster.

Note that this function is intended to be run on the Atlas cluster. If you make a bash script like this on Windows, you may have to run a command line utility like dos2unix on the file.

Value

invisible, writes a file to disk.

Examples

## Not run: 
copy_alf_outputs(
  "JFSP",
  "/big_scratch/shiny/Runs_Statewide/JFSP",
  domain = "ak1km")

## End(Not run)

leonawicz/alfresco documentation built on May 6, 2019, 4:59 p.m.