minidot_cat: Compile DO data

In leppott/ContDataQC: Quality Control (QC) of Continous Monitoring Data

Compile DO data

Description

This function compiles Dissolved Oxygen data files downloaded from PME miniDot DO loggers. Use if the data where not compiled using the PME java app on the logger.

Usage

minidot_cat(folderpath, savetofolder, local_tz = Sys.timezone(location = TRUE))

Arguments

folderpath	The folder where the individual files are located
savetofolder	The folder where the output csv is to be saved
local_tz	Local time zone used for converting from UTC time zone. Default is Sys.timezone(location = TRUE).

Details

Original function (compile_do_folder) written by Tim Martin.

https://github.com/mnsentinellakes/mnsentinellakes/blob/master/R/compile_do_folder.R

Edits:

* Renamed function

* Added local_tz as a parameter.

* Replaced lubridate::use_tz with as.POSIXct.

* Added format to avoid loss of time on midnight entries.

* Added serial number as column.

* Swapped order of operations so if fail condition is triggered it happens before any work is done.

* Added working example with data.

Value

In ouput folder a CSV file

Examples

# Data
dn_input <- file.path(system.file("extdata", package = "ContDataQC")
                      , "minidot")
dn_export <- tempdir()

# Function
minidot_cat(folderpath = dn_input, savetofolder = dn_export)

leppott/ContDataQC documentation built on Jan. 5, 2025, 10:12 a.m.