build_missingdata: Build Missing Data Report

In leppott/ContDataSumViz: Create Visualizations of Continuous Monitoring Data

Build Missing Data Report

Description

Build a missing data summary report based on ContDataQC user input files.

Usage

build_missingdata(
  dir_data = tempdir(),
  file_data = NULL,
  file_path_config = NULL,
  file_path_rmd = NULL,
  output_format = "html",
  output_dir = tempdir(),
  dayminrecpct = 90
)

Arguments

dir_data	Directory name with files.
file_data	Data file (CSV).
file_path_config	ContDataQC config file (path and file name). Default = NULL (use config.ORIG.R from extdata).
file_path_rmd	Path and file name of RMD used to generate the missing data summary report. Default = NULL (internal package)
output_format	File type for output (html only). Default = 'html'
output_dir	Output file path. Default = working directory
dayminrecpct	Minimum percent for number of daily records. Default = 90

Details

This function will create a missing data summary report based on files provided by the user.

The files to use are the ones already processed by the main QC function in ContDataQC. File format is CSV.

Output is a self contained HTML file (default).

Value

Returns summary report in the specified format (HTML, PDF, or Word).

Examples

# Copy Example files to Temp Directory
## Data
fn_data <- "DATA_test2_Aw_20130101_20141231.csv"
file.copy(file.path(path.package("ContDataSumViz"), "extdata", fn_data)
          , file.path(tempdir(), fn_data))
## Config
fn_config <- "config.ORIG.R"
fp_config <- file.path(tempdir(), fn_config)
file.copy(file.path(path.package("ContDataSumViz"), "extdata", fn_config)
          , fp_config)

# Render report
build_missingdata(dir_data = tempdir()
                 , file_data = fn_data
                 , file_path_config = fp_config
                 , file_path_rmd = NULL
                 , output_format = "html"
                 , output_dir = tempdir())

# Open Temp Directory (Windows only)
# shell.exec(tempdir())

leppott/ContDataSumViz documentation built on Jan. 30, 2024, 10 p.m.