leppott/MMIcalc: Calculate multi-metric index (MMI) values and scores.

Calculate metric values for benthic macroinvertebrates (bugs), fish, and algae. It will also calculate metric scores and score the sites based on input files. Calculation of metrics for multi-metric index (MMI) for benthic macroinvertebrates (bugs), fish, or periphyton (algae). Inputs are 3 files (master taxa list (with phylogeny, autecological information, and any operation taxonomic units (OTUs), stations (with location and any regional information), and a taxa samples file (with StationID, SampleID, TaxonID, Count, and Exclude code).

Getting started

Package details

URL https://github.com/leppott/MMIcalc
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
leppott/MMIcalc documentation built on May 21, 2019, 5:10 a.m.