In leppott/XC95: Extirpation Analysis for Benthic Macroinvertebrates and Fish

# knitr::opts_chunk$set(
#   collapse = TRUE,
#   comment = "#>",
#   fig.path = "NEWS-"
# )

cat(paste0("Last Update: ",Sys.time()))

Version history.

Planned Updates

• Only bug fixes planned at this time.

• No vignettes planned at this time.

XC95 0.0.3.9001 (2019-11-07)

• Add pkgdown website.
  • hc05 example needs work.

XC95 0.0.3 (2019-10-15)

• New release version.
  • HC05 calculation.
  • Minor updates.

XC95 v0.0.2.9003

2019-10-14

• HC05 calculation function.
• Add some formatting to data.R.
• Update DESCRIPTION.
• Add "Results" and "_test" directories to .gitignore and .Rbuildignore.

v0.0.2.9002

2018-05-23

• tolerance
  • Updated parameters text.
  • Added Details section to describe output.
  • Added reference to maps package
  • No modifications of analysis.
• DESCRIPTION
  • Added maps to Imports.

v0.0.2.9001

2018-04-23

• Add Travic_CI check to readme.

v0.0.2.0000

2018-04-16

• wt.cdf
  • Replacement for fish.wt.cdf.
  • More generic and a few more inputs to make more adaptable.

v0.0.1.9004

2018-04-13

• fish.wt.cdf, Example remove extra comment.
• wt.cdf
  • Updated version of fish.wt.cdf.
  • More flexibility with groups.
  • Added group names.
  • Defaulted all boolean parameters to TRUE.

v0.0.1.9003

2018-04-12

• fish.wt.cdf, Example
  • Updated group WS_Area to WS_AREA to match example data.
  • Updated example function to include groups and xvar.
  • Updated example SampleID from FishInvertID to Station_Date.

v0.0.1.9002

2017-04-25

• Update News.rd and remove an extra folder left from testing. No modifications to code.

v0.0.1.9001

2017-04-25

• Added area under the curve functions (auc.response() and auc.tolerance()) as independant functions. Removed code from the other functions (taxon.response(), taxon.response.sort(), and tolerance()).

v0.0.1.0000

2017-04-24

• Updated documentation to a whole number version and created a "release" on GitHub.

v0.0.0.9006

2017-04-24

• Removed fish.gam(). It is designed for another purpose.

• fish.wt.cdf(). Was previously named weighted.fish.cdf().

v0.0.0.9005

2017-04-18

• taxon.response(). Tweaked for example. Added and documented data files (QC_Benthic.txt and Env_metrics.txt as species and envdata.all). Added "mgcv::" to "gam()." and "Hmisc::" to "wtd.quantile" and "Ecdf".

v0.0.0.9004

2017-04-14

• Revised comment strings in scripts so will properly outline in RStudio; curve.shape.R, fish.wt.cdf.R, taxon.response.R, taxaon.response.sort.R, and tolerance.R. Also modified data prep files in raw data.

• tolerance(). Tweaked for example. Added data files (tol.ss and tol.env.data). Added "mgcv::" to "gam()." and "Hmisc::" to "wtd.quantile". Created data from raw files and documented.

v0.0.0.9003

2017-04-06

• taxon.response.sort(). Process raw data. Add data files df1.rda and taxalist.rda. Add library mgcv reference for gam(). Updated data.R for df1 and taxalist.

• Added new function dir.check.add() to ensure output folders exist.

• DESCRIPTION. Add mgcv to Imports.

v0.0.0.9002

2017-04-05

• Rename package from InvertExtirp to XC95. Update DESCRIPTION, NEWS, and README.

• Add data to use with examples.

• Added raw data for weightcdf(). Included script for creating the RDA files.

• Added documentation for the above data files (ss and bio.sample).

v0.0.0.9001

2017-04-04

• Update the R files for readability, documentation, and dependant packages for the functions. "tolerance_cov.R" requires the "reshape" package (update one call to reshape::cast and add to DESCRIPTION).

• Rename "tolerance_cov.R" to "tolerance.R" to match the function.

v0.0.0.9000

2017-03-29

• Created GitHub repository.

• Added ReadME.RMD and NEWS.RMD

• 7 functions; curve.shape, fish.gam, fish.wt.cdf, taxon.response, taxon.response.sort, tolerance_cov, weightedcdf2.

leppott/XC95 documentation built on Nov. 8, 2019, 5:59 p.m.