inst/extdata/README.md

Demo data from "Genetic regulatory signatures underlying islet gene expression and type 2 diabetes", Varshney et al. 2017, doi:10.1073/pnas.1621192114

Source: https://theparkerlab.med.umich.edu/data/papers/doi/10.1073/pnas.1621192114/

BED file fields:

  1. chrom
  2. chromStart
  3. chromEnd
  4. stateNumber_StateName
  5. Color codes

Other files

  1. emissions_statInfo.txt : Histone marks emission probabilities for each state
  2. heatmap_emission.png : Chromatin state emission heatmap figure
  3. make_bedfiles.sh + get_bedfiles.sh : Scripts to generate the *bed.gz in this directory


letaylor/variantBedOverlap documentation built on Dec. 24, 2019, 11:21 a.m.