API for lettis/prodyna
Protein Dynamics Analysis
| Global functions | |
|---|---|
| .list.PCA | Source code |
| .list.caDists | Source code |
| .list.caPCA | Source code |
| .list.dPCAplus | Source code |
| .list.dihedrals | Source code |
| .list.reactionCoords | Source code |
| .list.reference | Source code |
| .list.traj | Source code |
| circacf | Source code |
| clustering.compute.neighborhood | Source code |
| clustering.coring | Source code |
| clustering.densityNetwork | Source code |
| clustering.estimate.radii | Source code |
| clustering.microstates | Source code |
| clustering.microstates.renamed | Source code |
| clustering.mpp | Source code |
| clustering.screening | Source code |
| clustering.wtDistributions | Source code |
| fastacf | Source code |
| generate.caDistances | Source code |
| generate.cossinTransform | Source code |
| generate.dihedrals | Source code |
| generate.filteredCoordinates | Source code |
| generate.reactionCoordinates | Source code |
| get.binary | Source code |
| list.binaries | Source code |
| list.filesHelper | Source code |
| make.readme | Source code |
| msg | Source code |
| msm.countMatrix | Source code |
| msm.mfpt | Source code |
| msm.sim | Source code |
| msm.transitionMatrix | Source code |
| msm.transitionTimes | Source code |
| plt.autocor | Source code |
| plt.cumFlucts | Source code |
| plt.matrix | Source code |
| plt.mppNetwork | Source code |
| plt.pcaOverview | Source code |
| plt.pcaProj | Source code |
| plt.populations | Source code |
| plt.ramachandran | Source code |
| plt.ramacolor | Source code |
| plt.stateTrajComparison | Source code |
| plt.wtDistributions | Source code |
| rama2rgb | Source code |
| read.caDistances.info | Source code |
| read.cumFlucts | Source code |
| read.dihedrals | Source code |
| read.dihedrals.info | Source code |
| read.populations | Source code |
| read.wtDistributions | Source code |
| reverselog_trans | Source code |
| run.PCA | Source code |
| run.cmd | Source code |
| run.cmds | Source code |
| run.dPCAplus | Source code |
| set.binary | Source code |
| stats.autocor | Source code |
| streamed_cossin_transform | Source code |
| vmd.exec | Source code |
| vmd.loadPdb | Source code |
| vmd.quit | Source code |
| vmd.renderPostscript | Source code |
| vmd.run | Source code |
| vmd.setStyle | Source code |
| write.caDistances.info | Source code |
| write.dihedrals.info | Source code |
