Protein Dynamics Analysis

Global functions | |
---|---|

.list.PCA | Source code |

.list.caDists | Source code |

.list.caPCA | Source code |

.list.dPCAplus | Source code |

.list.dihedrals | Source code |

.list.reactionCoords | Source code |

.list.reference | Source code |

.list.traj | Source code |

circacf | Source code |

clustering.compute.neighborhood | Source code |

clustering.coring | Source code |

clustering.densityNetwork | Source code |

clustering.estimate.radii | Source code |

clustering.microstates | Source code |

clustering.microstates.renamed | Source code |

clustering.mpp | Source code |

clustering.screening | Source code |

clustering.wtDistributions | Source code |

fastacf | Source code |

generate.caDistances | Source code |

generate.cossinTransform | Source code |

generate.dihedrals | Source code |

generate.filteredCoordinates | Source code |

generate.reactionCoordinates | Source code |

get.binary | Source code |

list.binaries | Source code |

list.filesHelper | Source code |

make.readme | Source code |

msg | Source code |

msm.countMatrix | Source code |

msm.mfpt | Source code |

msm.sim | Source code |

msm.transitionMatrix | Source code |

msm.transitionTimes | Source code |

plt.autocor | Source code |

plt.cumFlucts | Source code |

plt.matrix | Source code |

plt.mppNetwork | Source code |

plt.pcaOverview | Source code |

plt.pcaProj | Source code |

plt.populations | Source code |

plt.ramachandran | Source code |

plt.ramacolor | Source code |

plt.stateTrajComparison | Source code |

plt.wtDistributions | Source code |

rama2rgb | Source code |

read.caDistances.info | Source code |

read.cumFlucts | Source code |

read.dihedrals | Source code |

read.dihedrals.info | Source code |

read.populations | Source code |

read.wtDistributions | Source code |

reverselog_trans | Source code |

run.PCA | Source code |

run.cmd | Source code |

run.cmds | Source code |

run.dPCAplus | Source code |

set.binary | Source code |

stats.autocor | Source code |

streamed_cossin_transform | Source code |

vmd.exec | Source code |

vmd.loadPdb | Source code |

vmd.quit | Source code |

vmd.renderPostscript | Source code |

vmd.run | Source code |

vmd.setStyle | Source code |

write.caDistances.info | Source code |

write.dihedrals.info | Source code |

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