DESCRIPTION
LICENSE
NAMESPACE
R/RcppExports.R
R/clustering.R
R/ext_binaries.R
R/io.R
R/messages.R
R/msm.R
R/plotting.R
R/prodyna.R
R/project_management.R
R/reaction_coords.R
R/stats.R
R/vmd_interface.R
README.md
TODO
docs/authors.html
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/reference/circacf.html
docs/reference/clustering.compute.neighborhood.html
docs/reference/clustering.densityNetwork.html
docs/reference/clustering.estimate.radii.html
docs/reference/clustering.get.pops.html
docs/reference/clustering.microstates.html
docs/reference/clustering.plot.pops.html
docs/reference/clustering.screening.html
docs/reference/fastacf.html
docs/reference/generate.caDistances.html
docs/reference/generate.cossinTransform.html
docs/reference/generate.dihedrals.html
docs/reference/generate.filteredCoordinates.html
docs/reference/generate.reactionCoordinates.html
docs/reference/get.binary.html
docs/reference/get.fullPath.html
docs/reference/index.html
docs/reference/init.html
docs/reference/list.binaries.html
docs/reference/msm.countMatrix.html
docs/reference/msm.sim.html
docs/reference/msm.transitionMatrix.html
docs/reference/plt.autocor.html
docs/reference/plt.cumFlucts.html
docs/reference/plt.matrix.html
docs/reference/plt.pcaOverview.html
docs/reference/plt.pcaProj.html
docs/reference/plt.ramachandran.html
docs/reference/plt.ramacolor.html
docs/reference/projectInfo.html
docs/reference/rama2rgb.html
docs/reference/read.cumFlucts.html
docs/reference/read.dihedrals.html
docs/reference/run.PCA.html
docs/reference/run.caPCA.html
docs/reference/run.dPCA.html
docs/reference/run.dPCAplus.html
docs/reference/set.binary.html
docs/reference/stats.autocor.html
docs/reference/streamed_cossin_transform.html
docs/reference/vmd.exec.html
docs/reference/vmd.loadPdb.html
docs/reference/vmd.quit.html
docs/reference/vmd.renderPostscript.html
docs/reference/vmd.run.html
docs/reference/vmd.setStyle.html
inst/extdata/remote_ctl.tcl
prodyna.Rproj
src/Makevars
src/RcppExports.cpp
src/circacf.cpp
src/fastacf.cpp
src/rama2rgb.cpp
src/streamed_cossin_transform.cpp
vignettes/prodynaTutorial.Rmd