Man pages for lgaborini/bayessource
Bayesian approach to evaluate whether two datasets come from the same population
| bayessource-package | Package bayessource |
| chol2inv | Compute the inverse from the upper Cholesky factor |
| diwishart | Inverted Wishart density, parametrization according to Press. |
| diwishart_inverse | Inverted Wishart density from the inverse (faster). |
| diwishart_inverse_R | Inverted Wishart density from the inverse. |
| dmvnorm | Multivariate normal density. Assumes symmetry. |
| dwishart | Wishart density. |
| get_minimum_nw_IW | Get minimum degrees of freedom for Inverted Wishart |
| inv_Cholesky_from_Cholesky | Upper Cholesky factor of inverse from upper Cholesky factor |
| inv_pd | Compute the inverse of a positive-definite matrix |
| inv_sympd_tol | Compute the inverse of a symmetric positive definite matrix |
| inv_triangular | Upper triangular matrix inversion |
| isCholeskyOn | Check whether Cholesky factorization is used. |
| ldet_from_Cholesky | log-determinant from Cholesky factor |
| logCummeanExp | Computes log( cummean_i( exp(v_i) )) in a stable way. |
| logCumsumExp | Computes log( cumsum_i( exp(v_i) )) in a stable way. |
| logSumExp | Computes log( sum_i(exp(v_i)) ) in a stable way. |
| logSumExpMean | Computes log( sum_i( exp(v_i)) ) - log(n) in a stable way. |
| make_priors_and_init | Elicit priors and initialization from background dataset |
| marginalLikelihood | Fast computation of the marginal likelihood for the... |
| marginalLikelihood_internal | Fast computation of the Normal-IW marginal likelihood. |
| mcmc_postproc | Post-process Gibbs chain outputs. |
| riwish_Press | Generate random sample from Inverted Wishart. |
| rmvnorm | Generate from multivariate normal. |
| rwish | Generate random sample from Wishart (faster). |
| samesource_C | Fast computation of the Bayes Factor (same source v.... |
| two.level.multivariate.calculate.UC | Calculate Between/Within covariance matrices |
