processingQueue: Processing Queue

In lgatto/ProtGenerics: Generic infrastructure for Bioconductor mass spectrometry packages

Processing Queue

Description

These methods are related to the *processing queue* implemented in the [Spectra](https://github.com/RforMassSpectrometry/Spectra) and [Chromatograms](https://github.com/RforMassSpectrometry/Chromatograms) packages.

- 'addProcessing()' adds a processing step to the processing queue.

- 'applyProcessing()' execute the processing queue replacing the original data in 'object' with the processed one.

- 'processingChunkSize()' and 'processingChunkSize()<-' are supposed to get and set the number of elements (e.g. spectra) for which the data is loaded into memory and processed at a time.

- 'processingChunkFactor()': defines a 'factor' that can be used to split 'object' into chunks defined by the length of 'object' and its 'processingChunkSize()'.

Usage

processingChunkSize(object, ...)

processingChunkSize(object, ...) <- value

addProcessing(object, ...)

applyProcessing(object, ...)

processingChunkFactor(object, ...)

Arguments

object	The object with the processing queue.
...	Additional parameters to be defined.
value	The replacement value.

lgatto/ProtGenerics documentation built on Jan. 18, 2025, 6:52 a.m.