NEWS.md
In lgatto/hpar: Human Protein Atlas in R

hpar 1.41

Drop getHpa() function and use base R or tidyverse (as illustrated in the vignette).
Repalce getHpa(type = "details") by browseHPA().
Serve data through ExperimentHub.
Update to HPA release 21.1 <2022-05-31 Tue>
New datasets added: rnaConsensusTissue, rnaHpaTissue, rnaGtexTissue, rnaFantomTissue.
The dataset rnaGeneTissue becomes rnaGeneTissue21.0 as no longer available in version 21.1

hpar 1.37

Update to HPA release 21.0 <2021-11-22 Mon>

hpar 1.35

Suggest rmarkdown

New Bioc devel version

hpar 1.33

Private getHpaRelease() and newHpaVersion() functions that extracts the version, date and ensembl version from the Human Protein Atlas webpage and compares the version to the data in hpar.

Update to HPA release 20.0 <2020-11-24 Thu>

Update to HPA release 19.3 (2020.03.06) <2020-10-26 Mon>
New release for Bioconductor devel 3.12 <2020-10-26 Mon>
Updated R version (>= 3.5.0) in Depends field <2020-10-26 Mon>
Added the Secretome data <2020-10-28 Wed>
Updated the documentation and docs folder for pkgdown <2020-10-29 Thu>
Automated allHparData() <2020-10-29 Thu>

New Bioc devel version

hpar 1.29

Update email address <2020-03-29 Sun>

hpar 1.25

Update to HPA release 18.1 <2019-01-21 Mon>

New release for Bioconductor devel 3.9

hpar 1.24

New release for Bioconductor 3.8

hpar 1.23

Update README to use BiocManager <2018-09-03 Mon>

Use BiocManager for installation <2018-07-19 Thu>

Rename 16.1 objects <2018-05-23 Wed>

New Bioconductor devel
Update to HPA version 18

hpar 1.22

New Bioconductor release

hpar 1.21

use html_document (rather that deprecated html_document2) <2018-01-19 Fri>

hpar 1.19

Re-generate data sets from scripts/getHpaData.R, as discrepancies with the data downloaded form the hpa site were documented by Martin Bush <2017-07-19 Wed>

new Bioconductor devel

new Bioconductor release

Update to HPA version 16.1 (2017.01.31) <2017-02-14 Tue>

Using travis and codecov <2016-12-22 Thu>
Migrate vignette to BiocStyle's html2 <2016-12-22 Thu>

Bioconductor devel 3.5

Bioconductor release 3.4

Updating to HPA version 15, with new datasets <2016-09-14 Wed>

Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if R_CHECK_TIMINGS is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. r117512 | d.tenenbaum | 2016-05-15 21:14:22 +0100 (Sun, 15 May 2016) | 6 lines

Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. r117081 | d.tenenbaum | 2016-05-03 22:30:44 +0100 (Tue, 03 May 2016) | 2 lines

Bioc version 3.3

Bioc version 3.1

unit tests <2015-06-30 Tue>

Bio version 3.2 (devel)

Bio version 3.1 (release)

Updated to HPA version 13 <2014-11-15 Sat>
Use BiocStyle for vignette <2014-11-15 Sat>

Updated to HPA version 11 <2013-04-11 Thu>

Bioc 2.13 devel version bump

Bioc 2.12 stable version bump

Vignette update for knitr 1.0 compatibility, thanks Dan! <2013-01-15 Tue>

fixing vignette <2012-10-02 Tue>

version bump for new devel <2012-10-01 Mon>

hpar 0.99

Added collate field <2012-09-14 Fri>
Updated to HPA version 10 <2012-09-15 Sat>
Updated installation part in section to use biocLite <2012-09-15 Sat>

Added vignette <2012-09-06 Thu>

Initial commit <2012-09-06 Thu>

lgatto/hpar documentation built on Dec. 5, 2022, 6:29 a.m.

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