checkFeatureNamesOverlap: Check feature names overlap

In lgatto/pRoloc: A unifying bioinformatics framework for spatial proteomics

Check feature names overlap

Description

Checks the marker and unknown feature overlap of two MSnSet instances.

Usage

checkFeatureNamesOverlap(x, y, fcolx = "markers", fcoly, verbose = TRUE)

Arguments

x	An MSnSet instance.
y	An MSnSet instance.
fcolx	The feature variable to separate unknown (fData(y)$coly == "unknown") from the marker features in the x object.
fcoly	As fcolx, for the y object. If missing, the value of fcolx is used.
verbose	If TRUE (default), the overlap is printed out on the console.

Value

Invisibly returns a named list of common markers, unique x markers, unique y markers in, common unknowns, unique x unknowns and unique y unknowns.

Author(s)

Laurent Gatto

Examples

library("pRolocdata")
data(andy2011)
data(andy2011goCC)
checkFeatureNamesOverlap(andy2011, andy2011goCC)
featureNames(andy2011goCC)[1] <- "ABC"
res <- checkFeatureNamesOverlap(andy2011, andy2011goCC)
res$markersX
res$markersY

lgatto/pRoloc documentation built on Nov. 27, 2024, 12:14 a.m.