readSampleExperimentTable: Read the sample experiment table

In lgatto/rtslprot: Analyse proteomics data

Description

This function read the sample experiment table and checks that all the mzML and mzid files exist. The names of the files (without extensions) must be defined in a column "name" in the sample experiment table.

Usage

readSampleExperimentTable(f = "SampleExperimentTable.csv",
  mzml = "mzml", mzid = "msgf")

Arguments

f	character(1) defining the name of the sample experiment table in comma separated values (csv) format. Default is "SampleExperimentTable.csv".
mzml	character(1) defining the directory name where the mzML files can be found. Default is "mzml".
mzid	character(1) defining the directory name where the mzid files can be found. Default is "msgf".

Value

data.frame with the sample experiment table.

lgatto/rtslprot documentation built on July 9, 2019, 6:45 p.m.