TODO.md
In li-lam/BotanizeR: BotanizeR quiz for memorizing the plant species

BotanizeR

TO DO list

~~fix the mismatch bug~~
~~design settings tab from which to choose the desired version from (winter, summer, other)~~
~~making the app as flexible as possible. Users choose their own list and criteria~~
~~filtering via column in df <- solved y having predefined subsets~~
~~summary stats about species list: number of species~~
~~save initial scores as reactive values when new list loaded~~
~~control for right columns in data.frame~~
~~only accept ownhint columns to make security checks easier~~
~~get rid of omit_columns statement~~
~~make example datasets available via dropdown~~
~~read custom hints from table header~~
~~image folders~~
~~config file for default values: config.R~~
~~Radio buttons checking/unchecking several times~~
~~Sanguisorba minor: species without UK map caused error when enabling uk map in settings while German was shown~~
~~allow to upload previous progress table for defining sample probabilities (higher prob for species not well practiced)~~
~~record successes (score; account for retrieved answer) and number of times species shown and include them in the progress download~~
~~make sure score is counted if answer is retrieved accidentally after getting the name right~~
~~remove checkboxes if content is not available~~
make common name and family name independent of floraweb
add them to species list table, but not obligatory (too big a hurdle)
allow practicing common name
~~seems to load map each time a box is unchecked (takes long)~~
~~make individual checkbox object for map~~
~~error finite ylim value needed... if no map available?~~
~~Ownhints are only showing after setup tab has been visited~~
~~Only list own hints in setup which have data for species subset~~
don't show hints that are not available?
~~remove ownhint_ from checkboxes~~
~~Add ownhint category to hints printout~~
~~previous and next species button in species list tab~~
~~previous and next species working with keyboard~~
make left and right buttons in quiz switch pictures also when outside slider
~~don't do adist when "" submitted~~
chorology?
add to BotanizeR_collect
Use Halle chorology site directly?
show as one of the images?
~~add to setup~~
~~remove from quiz due to species name in map~~
~~Add UK flora~~
~~filfeform not working~~
~~Summary statistics~~
~~number of species practiced, number correct as bar plot? (quiz page popup)~~
~~number of species in currently loaded species list (setup page)~~
~~Plot UK map and think about where to plot maps in general. Make space available if maps not plotted?~~
~~App becomes unresponsive if you choose no picture source or the wrong one and the quiz keeps trying to find a species with picture~~
~~Why does species list page update immediately after setup changes and quiz doesn't?~~
~~Only 1000 entries in species list dropdown. Use Selectize~~
~~Some UK pictures don't exist as large pictures and hence don't show up~~
~~now that the images scale properly we could load the larger ones for these cases. Need control for this~~
~~Make images scale automatically in slickR slider~~
~~Map legend and credits~~
~~separate UK and DE credits in quiz hints~~
Allow defining images not used in quiz
~~no map text~~
~~if map is checked, going to next species is slow because new map loads (uncheck first)~~
~~make whether setup tab is shown a variable in config~~
~~include upload and download of species list in quiz if setup tab is disabled~~
~~Give feedback about species number and number of species practiced in upload popup on Quizpage~~
~~Put upload/download buttons into popup on species page~~
~~Twitter buttons in navbar and stats~~
~~change links for different instances~~
~~Privacy issues (Martin)~~
zoom into images
Think about the draggable popup (already implemented but commented out)
Multiple Choice
~~Stats, counting last one if identified?~~
Flora Incognita images?
~~unique species counting too few due to overall table?~~
~~include == 0 if floraweb down? <- not the case~~
~~ownhints uncheck when uploading species list in quiz popup~~
~~Quiz sometimes shows hints of previous species; Links to floraweb and ukplantatlas are fine though~~
~~replace species names in descriptions be "The species"~~
Size of right quiz column jumping include something to have a minimum width (scrollbar)
~~Add image credits below slider~~
modify BotanizeR_collect to keep track of image source <- started
Make some of the elements in the about page dependent on the resources used
If floraweb used: Floraweb credits
If own images used load file with image credits
instructions
how does table for upload have to look like
About tab: more details; dynamic depending on what is shown
redo message images (harmonize)
~~button to disable dynamic probabilities~~
~~Hints are visible for a short moment when going on to next species~~
~~check/uncheck all button for hints~~
~~Make the GBIF stuff optional in config~~
~~semicolon in csv~~
~~Control for sum(species$included)==0 for species list upload~~

check if cases with more than two images in floraweb exist and write loop for BotanizeR_collect!
add flowering time and vegetative/sexual reproduction
~~Replace "." and alike in species names for finding local pictures~~
add content from other websites
~~UK-flora~~
Telabotanica
plot first image before map is loaded to safe time.
loading bar for map
add synonyms
~~species list Göttingen~~
~~check image folder path in local shiny app~~
make error messages in case floraweb is not available
~~define columns needed for species list~~
~~combine the tables and make columns for UK and GER~~
Subspecies in UK-list
Map floraweb distribution based on api
switch entirely to httr to get rid of temp folders
jpg, JPG, JPEG, jpeg etc. for own folder
~~Control for coordinates outside -180:180; -89:89~~
Consider getting rid of magick::read_image to simplify installation for Ubuntu users
Image Folder access in BotanizeR_shiny()

~~center smaller images in slider~~
~~avoid overlap of contents when changing window size~~
~~define min width of middle column or make slickR slider shrink~~
~~Source floraweb is inbetween the hints (above habitat); Make dependent on whether floraweb content is shown or not~~
~~adjust height of panel columns~~
~~move items~~
~~download button~~
~~Make correct more prominent and easier to go to next species; info messages~~
~~Make correct easier to go to next species~~
~~Clean info messages~~
Make online resources in Setup collapsable
Line in About Tab