ave.rates: Average the posterior rates

Description Usage Arguments Value Author(s) References See Also

View source: R/evol.rate.mcmc.R

Description

Primarily used internally by posterior.evolrate.

Usage

1
ave.rates(tree, shift, tips, sig1, sig2, ave.shift, showTree=TRUE)

Arguments

tree

a tree.

shift

the shift point for this sample.

tips

tip names tipward of shift.

sig1

rate 1.

sig2

rate 2.

ave.shift

average shift from all samples.

showTree

logical value indicating whether to plot the rate-stretched tree.

Value

A list of the rates.

Author(s)

Liam Revell [email protected]

References

Revell, L. J. (2012) phytools: An R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol., 3, 217-223.

See Also

evol.rate.mcmc, minSplit, posterior.evolrate


liamrevell/phytools documentation built on Nov. 22, 2018, 5:21 p.m.