API for liangyy/mixqtl
Combine total and allele-specific counts for cis-QTL analysis
| Global functions | |
|---|---|
| approx_susie | Source code |
| calc_var | Source code Source code |
| combine_two_stats | Source code |
| create_betas | Man page Source code |
| create_gene | Man page Source code |
| create_genotype | Man page Source code |
| do_elastic_net | Man page Source code |
| effect_size_trc_with_covariates_get_coef_refactored | Source code |
| fit_glmnet_with_cv | Man page Source code |
| generate_gene_instance | Source code |
| get_betas_controlling_var | Source code |
| get_permutations | Man page Source code |
| get_pval | Source code |
| get_pval_fast_ | Source code |
| guess_alpha_beta_from_mu_sd | Source code |
| guess_k_sigma_from_mu_sd | Source code |
| harmonic_sum_ | Source code |
| impute_geno | Man page Source code |
| is_overlap | Source code |
| matrixQTL_one_dim | Man page Source code |
| matrixQTL_two_dim | Man page Source code |
| matrixQTL_with_mask_one_dim | Man page Source code |
| matrixQTL_with_mask_two_dim | Man page Source code |
| matrix_ls_asc | Man page Source code |
| matrix_ls_asc_permutation | Man page Source code |
| matrix_ls_trc | Man page Source code |
| matrix_ls_trc_permutation | Man page Source code |
| meta_analyze | Man page Source code |
| mixfine | Man page Source code |
| mixfine_old | Man page Source code |
| mixpred | Man page Source code |
| mixpred_old | Man page Source code |
| mixqtl | Man page Source code |
| my_meta_ | Source code |
| my_meta_fast_ | Source code |
| mydiag | Source code |
| read2data | Source code |
| regress_against_covariate | Man page Source code |
| regress_out_covar | Source code |
| run_susie_default | Source code |
| simulate_read_count | Man page Source code |
| simulate_read_count_multi | Man page Source code |
| t2p_ | Source code |
| z2p_ | Source code |
