create_genotype: Generate genotype (for single SNP model only)
In liangyy/mixqtl: Combine total and allele-specific counts for cis-QTL analysis

Given MAF range and sample size, generate dosage genotype (0, 1, 2) for one site.

1	create_genotype(maf, nsample, nreplicate)

`maf`	MAF range, c(maf_low, maf_high)
`nsample`	number of individual to simulate
`nreplicate`	number of replicates to simulation

a list of length nreplicate where each element contains a data.frame of simulation genotype (for each haplotype) along with allele frequency.

create_genotype(
  maf = c(0.05, 0.3),
  nsample = 300,
  nreplicate = 1000
)

liangyy/mixqtl documentation built on Sept. 17, 2020, 11:36 a.m.

liangyy/mixqtl index

README.md

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

Description