Files in liangyy/mixqtl
Combine total and allele-specific counts for cis-QTL analysis
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/mixfine.R
R/mixfine_old.R
R/mixpred.R
R/mixpred_old.R
R/mixqtl.R
R/rlib_covariate.R
R/rlib_matrix_ls.R
R/rlib_matrix_ls_with_mask.R
R/rlib_meta.R
R/rlib_mixfine_util_dev.R
R/rlib_multi_util.R
R/rlib_simulation_util.R
R/rlib_util.R
R/simulation_multi.R
R/simulation_single.R
README.md
TODO.md
UPDATE_NOTES.md
man/create_betas.Rd
man/create_gene.Rd
man/create_genotype.Rd
man/do_elastic_net.Rd
man/fit_glmnet_with_cv.Rd
man/get_permutations.Rd
man/impute_geno.Rd
man/matrixQTL_one_dim.Rd
man/matrixQTL_two_dim.Rd
man/matrixQTL_with_mask_one_dim.Rd
man/matrixQTL_with_mask_two_dim.Rd
man/matrix_ls_asc.Rd
man/matrix_ls_asc_permutation.Rd
man/matrix_ls_trc.Rd
man/matrix_ls_trc_permutation.Rd
man/meta_analyze.Rd
man/mixfine.Rd
man/mixfine_old.Rd
man/mixpred.Rd
man/mixpred_old.Rd
man/mixqtl.Rd
man/regress_against_covariate.Rd
man/simulate_read_count.Rd
man/simulate_read_count_multi.Rd
mixqtl.Rproj
scripts/parse_gencode.py
scripts/parse_geuvadis_expression.py
scripts/parse_vcf.py
scripts/run_mixqtl.R
scripts/tutorial_run_mixqtl.sh
third_party/emma_1.1.2.1.tar.gz
