likelet/CaMutQC: An R Package for Comprehensive Filtration and Selection of Cancer Somatic Mutations

CaMutQC is able to filter false positive mutations generated due to technical issues, as well as to select candidate cancer mutations through a series of well-structured functions by labeling mutations with various flags. And a detailed and vivid filter report will be offered after completing a whole filtration or selection section. Also, CaMutQC integrates serveral methods and gene panels for Tumor Mutational Burden (TMB) estimation.

Getting started

Package details

Bioconductor views GeneTarget QualityControl Software
Maintainer
LicenseGPL-3
Version1.0.1
URL https://github.com/likelet/CaMutQC
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("likelet/CaMutQC")
likelet/CaMutQC documentation built on Aug. 17, 2024, 4 a.m.