An R package for simply plot volcano figures based on DE analysis result. Demo site: https://zhaoqi.shinyapps.io/VolcanoP/
To check the dependencies installed correctly, this command can help users to check the status of each installation
library("Packages for check")
Code for install dependencies R packages
cDep <- c("ggplot2","shiny","shinyBS","shinydashboard","ggthemes","DT","dplyr","ggrepel","plotly")
###INSTALLED PACKAGES
#get installed list
inst <- packageStatus()$inst
#check and install DEPENDENCIES from CRAN
for(i in 1:length(cDep)){
tag = which(inst$Package == cDep[i])
if(length(tag)){
remove.packages(cDep[i])
}
install.packages(cDep[i])
}
To install the latest development build directly from GitHub, run this:
if (!require("devtools"))
install.packages("devtools")
devtools::install_github("likelet/volcanoP")
Qi Zhao, zhaoqi@sysucc.org.cn
Qi Zhao, zhaoqi@sysucc.org.cn
Qi Zhao Please feel free contact us.
MIT license
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