README.md

In likelet/volcanoP: an shiny R packages for volcanoPlot based on differential expression analysis

volcanoP

An R package for simply plot volcano figures based on DE analysis result. Demo site: https://zhaoqi.shinyapps.io/VolcanoP/

Screen shot

Install dependencies

To check the dependencies installed correctly, this command can help users to check the status of each installation

library("Packages for check")

Code for install dependencies R packages

cDep <- c("ggplot2","shiny","shinyBS","shinydashboard","ggthemes","DT","dplyr","ggrepel","plotly")

###INSTALLED PACKAGES
#get installed list
inst <- packageStatus()$inst

#check and install DEPENDENCIES from CRAN
for(i in 1:length(cDep)){
  tag = which(inst$Package == cDep[i])
  if(length(tag)){
    remove.packages(cDep[i])
  }
  install.packages(cDep[i])
}

Install volcanoP

To install the latest development build directly from GitHub, run this:

if (!require("devtools"))
  install.packages("devtools")
devtools::install_github("likelet/volcanoP")

Update Information

Designers:

Qi Zhao, [e-mail]

Developers:

Qi Zhao, [e-mail]

Maintainer:

Qi Zhao Please feel free contact us.

Copyright

MIT license

likelet/volcanoP documentation built on May 24, 2019, 5:01 a.m.