bindex: A function to creat new report with required files copied and...
In lileok/projectR:
Description
Usage
Arguments
Value
Note
References
Description
Calculate Bimodal Index
Usage
1
Arguments
dataset
A matrix or data.frame, usually with columns representing samples
and rows representing genes or proteins.
na.rm
Logical. If remove na before calculating bi. If False, bi will not be calculated for
any row with NA,
verbose
A logical value; should the function output a stream of information while it is working?
Value
Returns a data frame containing six columns, with the rows corresponding to
the rows of the original data set.
The columns contain the four parameters from the normal mixture model (mu1, mu2, sigma, and pi)
along with the standardized distance delta and the bimodal index BI.
Note
update from bimodalIndex BimodalIndex
References
Wang J, Wen S, Symmans WF, Pusztai L, Coombes KR.
The bimodality index: A criterion for discovering and ranking bimodal signatures from cancer gene expression profiling data.
Cancer Informatics, 2009 Aug 5; 7:199<e2><80><93>216.
lileok/projectR documentation built on May 21, 2019, 6:15 a.m.
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Description Usage Arguments Value Note References
Description
Calculate Bimodal Index
Usage
1 |
Arguments
dataset |
A matrix or data.frame, usually with columns representing samples and rows representing genes or proteins. |
na.rm |
Logical. If remove na before calculating bi. If False, bi will not be calculated for any row with NA, |
verbose |
A logical value; should the function output a stream of information while it is working? |
Value
Returns a data frame containing six columns, with the rows corresponding to the rows of the original data set. The columns contain the four parameters from the normal mixture model (mu1, mu2, sigma, and pi) along with the standardized distance delta and the bimodal index BI.
Note
update from bimodalIndex BimodalIndex
References
Wang J, Wen S, Symmans WF, Pusztai L, Coombes KR. The bimodality index: A criterion for discovering and ranking bimodal signatures from cancer gene expression profiling data. Cancer Informatics, 2009 Aug 5; 7:199<e2><80><93>216.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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