lindan1128/coreMicrobiome: Core microbiome analysis and visualization

coreMicrobiome is a R package for scientists to conduct explore and visualization of core microbial species which comprises four functional modules: (1) Initial visualization of sampling effort and distribution of dominant bacterial taxa among groups or individual samples at different taxonomic levels; (2) Analysis of Abundance-occupancy distribution and visualizations; (3) Co-occurrence network construction, analysis, comparisons and visualizations; (4) A combined visualization of abundance-occupancy distribution and co-occurrence network for understanding the core species from the common perspective and ecosystem perspective.

install.packages("remotes")
remotes::install_github("lindan1128/coreMicrobiome")