count_func_compare: count_func_compare

In lindan1128/coreMicrobiome: Core microbiome analysis and visualization

count_func_compare

Description

Plots arrow plots showing the procruste rotation comparing otu and functions and the overlap between otu and functions representations using spls.

Usage

count_func_compare(otu, funct, taxa, rank)

Arguments

otu	a community count data matrix with samples in rows and OTUs/taxa in column,
taxa	a taxa information matrix. The rownames must match the OTU names (taxa_names) of the otu,
rank	a taxonomic rank (Phylum or Class or Order or Family or Genus or Species),
functional_profile	a community count data matrix with samples in rows and OTUs/taxa in column,

Details

Plots arrow plots showing the procruste rotation comparing otu and functions and the overlap between otu and functions representations using spls.

Value

Arrow plot showing the procruste rotation comparing otu and functions and the overlap between otu and functions representations using spls.

Examples

 count_func_compare(otu, funct, taxa, rank='Class')

lindan1128/coreMicrobiome documentation built on May 5, 2022, 8:24 p.m.