API for lindan1128/coreMicrobiome
Core microbiome analysis and visualization
| Global functions | |
|---|---|
| C_from_V | Source code |
| ZiPivalue | Source code |
| abun_occ_plot | Man page Source code |
| abundance_plot | Man page Source code |
| among_module_connectivity | Source code |
| assign_module_roles | Source code |
| av | Source code |
| basis_cov | Source code |
| basis_var | Source code |
| bc_rank_plot | Man page Source code |
| boot_cclasso | Man page Source code |
| cclasso | Man page Source code |
| cclasso_sub | Man page Source code |
| common_core | Source code |
| cor2cov | Source code |
| count_func_compare | Man page Source code |
| cv_loss_cclasso | Man page Source code |
| delet_repeat | Source code |
| dis_func_occ | Source code |
| dis_func_occ_loop | Source code |
| dis_occ | Source code |
| dis_occ_loop | Source code |
| exclude_pairs | Source code |
| filter_prevalence | Source code |
| func_rank_plot | Man page Source code |
| function_core | Source code |
| get_avg_occ | Source code |
| get_avg_rel_abun | Source code |
| get_cclasso_statistics | Source code |
| get_func_heatmap_coordinates | Source code |
| get_heatmap_coordinates | Source code |
| get_networks_coodinates | Source code |
| get_propr_statistics | Source code |
| get_sparcc_statistics | Source code |
| get_spieceasi_statistics | Source code |
| heatmap_plot | Man page Source code |
| mean_func_occ_diff_plot | Man page Source code |
| mean_occ_diff_plot | Man page Source code |
| module.roles | Source code |
| network_degree | Source code |
| networks_plot | Man page Source code |
| networks_properties_plot | Man page Source code |
| networks_shared_ne_plot | Man page Source code |
| networks_statistics | Source code |
| networks_taxa_role | Man page Source code |
| norm_diric | Source code |
| norm_to_total | Source code |
| participation_coeffiecient | Source code |
| phfnetworks | Man page Source code |
| phfunc | Man page Source code |
| phnetworks | Man page Source code |
| preve_abun_dis_plot | Man page Source code |
| preve_func_dis_plot | Man page Source code |
| pval.sparccboot | Man page Source code |
| random_forest_plot | Man page Source code |
| sparcc | Man page Source code |
| sparccboot | Man page Source code |
| sparccinner | Source code |
| species_acc_plot | Man page Source code |
| tree_abun_plot | Man page Source code |
| tree_func_plot | Man page Source code |
| triu | Source code |
| triu2diag | Source code |
| within_module_degree | Source code |
| zscore | Source code |
