Files in lindan1128/coreMicrobiome
Core microbiome analysis and visualization
DESCRIPTION
NAMESPACE
R/abun_occ_plot.R
R/abundance_plot.R
R/bc_rank_plot.R
R/cores.R
R/count_func_compare.R
R/func_rank_plot.R
R/heatmap_plot.R
R/mean_func_occ_diff_plot.R
R/mean_occ_diff_plot.R
R/networks.R
R/networks_plot.R
R/networks_properties_plot.R
R/networks_shared_ne_plot.R
R/networks_taxa_role.R
R/phfnetworks.R
R/phfunc.R
R/phnetworks.R
R/preve_abun_dis_plot.R
R/preve_func_dis_plot.R
R/random_forest_plot.R
R/species_accumulation_plot.R
R/tree_abun_plot.R
R/tree_func_plot.R
R/utilizes.R
README.md
coreMicrobiome.Rproj
img/coreMicrobiome.png
man/abun_occ_plot.Rd
man/abundance_plot.Rd
man/bc_rank_plot.Rd
man/boot_cclasso.Rd
man/cclasso.Rd
man/cclasso_sub.Rd
man/count_func_compare.Rd
man/cv_loss_cclasso.Rd
man/func_rank_plot.Rd
man/heatmap_plot.Rd
man/mean_func_occ_diff_plot.Rd
man/mean_occ_diff_plot.Rd
man/networks_plot.Rd
man/networks_properties_plot.Rd
man/networks_shared_ne_plot.Rd
man/networks_taxa_role.Rd
man/phfnetworks.Rd
man/phfunc.Rd
man/phnetworks.Rd
man/preve_abun_dis_plot.Rd
man/preve_func_dis_plot.Rd
man/pval.sparccboot.Rd
man/random_forest_plot.Rd
man/sparcc.Rd
man/sparccboot.Rd
man/species_acc_plot.Rd
man/tree_abun_plot.Rd
man/tree_func_plot.Rd
testdata/otu.csv
testdata/sample.csv
testdata/taxa.csv
testdata/tree.nwk
tutorial/tutorial.pdf
