Man pages for lindan1128/coreMicrobiome
Core microbiome analysis and visualization
| abundance_plot | abundance_plot |
| abun_occ_plot | abun_occ_plot |
| bc_rank_plot | bc_rank_plot |
| boot_cclasso | This function runs CCLasso for only one lambda adapted from... |
| cclasso | This function runs CCLasso in R adapted from... |
| cclasso_sub | This function runs CCLasso for only one lambda adapted from... |
| count_func_compare | count_func_compare |
| cv_loss_cclasso | This function gets bootstrapped estimates of CCLasso... |
| func_rank_plot | func_rank_plot |
| heatmap_plot | heatmap_plot |
| mean_func_occ_diff_plot | mean_func_occ_diff_plot |
| mean_occ_diff_plot | mean_occ_diff_plot |
| networks_plot | networks_plot |
| networks_properties_plot | networks_properties_plot |
| networks_shared_ne_plot | networks_shared_ne_plot |
| networks_taxa_role | networks_taxa_role |
| phfnetworks | phfnetworks |
| phfunc | phfunc |
| phnetworks | phnetworks |
| preve_abun_dis_plot | preve_abun_dis_plot |
| preve_func_dis_plot | preve_func_dis_plot |
| pval.sparccboot | This function get empirical p-values from bootstrap SparCC... |
| random_forest_plot | random_forest_plot |
| sparcc | This function runs SparCC in R adapted from... |
| sparccboot | This function gets bootstrapped estimates of SparCC... |
| species_acc_plot | species_acc_plot |
| tree_abun_plot | tree_abun_plot |
| tree_func_plot | tree_func_plot |
