selectr: Select from a Set of Strings

airGR

Version: 1.3.2.42
Source code: https://github.com/cran/airGR
URL: https://hydrogr.github.io/airGR/
BugReports: https://gitlab.irstea.fr/HYCAR-Hydro/airgr/issues
Date/Publication: 2019-09-22 17:30:02 UTC
Number of recursive dependencies: 107

Run revdep_details(,"airGR") for more info

checking whether package ‘airGR’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/airGR/new/airGR.Rcheck/00install.out’ for details.

* installing *source* package ‘airGR’ ...
** package ‘airGR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c airGR.c -o airGR.o
gfortran-8  -fPIC  -Wall -g -O2  -c frun_cemaneige.f -o frun_cemaneige.o
make: gfortran-8: No such file or directory
make: *** [frun_cemaneige.o] Error 1
ERROR: compilation failed for package ‘airGR’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/airGR/new/airGR.Rcheck/airGR’

* installing *source* package ‘airGR’ ...
** package ‘airGR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c airGR.c -o airGR.o
gfortran-8  -fPIC  -Wall -g -O2  -c frun_cemaneige.f -o frun_cemaneige.o
make: gfortran-8: No such file or directory
make: *** [frun_cemaneige.o] Error 1
ERROR: compilation failed for package ‘airGR’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/airGR/old/airGR.Rcheck/airGR’

annotation

Version:
Source code: ???
URL: https://tidyselect.r-lib.org, https://github.com/r-lib/tidyselect
BugReports: https://github.com/r-lib/tidyselect/issues
Number of recursive dependencies: 0

Run revdep_details(,"") for more info


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘BSgenome.Hsapiens.UCSC.hg19’, ‘Homo.sapiens’, ‘org.Hs.eg.db’, ‘org.Mm.eg.db’, ‘TxDb.Athaliana.BioMart.plantsmart22’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’, ‘TxDb.Hsapiens.UCSC.hg38.knownGene’, ‘TxDb.Mmusculus.UCSC.mm10.ensGene’


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘BSgenome.Hsapiens.UCSC.hg19’, ‘Homo.sapiens’, ‘org.Hs.eg.db’, ‘org.Mm.eg.db’, ‘TxDb.Athaliana.BioMart.plantsmart22’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’, ‘TxDb.Hsapiens.UCSC.hg38.knownGene’, ‘TxDb.Mmusculus.UCSC.mm10.ensGene’

annotatr

Version:
Source code: ???
URL: https://tidyselect.r-lib.org, https://github.com/r-lib/tidyselect
BugReports: https://github.com/r-lib/tidyselect/issues
Number of recursive dependencies: 0

Run revdep_details(,"") for more info


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘org.Dm.eg.db’, ‘org.Gg.eg.db’, ‘org.Hs.eg.db’, ‘org.Mm.eg.db’, ‘org.Rn.eg.db’, ‘TxDb.Dmelanogaster.UCSC.dm3.ensGene’, ‘TxDb.Dmelanogaster.UCSC.dm6.ensGene’, ‘TxDb.Ggallus.UCSC.galGal5.refGene’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’, ‘TxDb.Hsapiens.UCSC.hg38.knownGene’, ‘TxDb.Mmusculus.UCSC.mm10.knownGene’, ‘TxDb.Mmusculus.UCSC.mm9.knownGene’, ‘TxDb.Rnorvegicus.UCSC.rn4.ensGene’, ‘TxDb.Rnorvegicus.UCSC.rn5.refGene’, ‘TxDb.Rnorvegicus.UCSC.rn6.refGene’


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘org.Dm.eg.db’, ‘org.Gg.eg.db’, ‘org.Hs.eg.db’, ‘org.Mm.eg.db’, ‘org.Rn.eg.db’, ‘TxDb.Dmelanogaster.UCSC.dm3.ensGene’, ‘TxDb.Dmelanogaster.UCSC.dm6.ensGene’, ‘TxDb.Ggallus.UCSC.galGal5.refGene’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’, ‘TxDb.Hsapiens.UCSC.hg38.knownGene’, ‘TxDb.Mmusculus.UCSC.mm10.knownGene’, ‘TxDb.Mmusculus.UCSC.mm9.knownGene’, ‘TxDb.Rnorvegicus.UCSC.rn4.ensGene’, ‘TxDb.Rnorvegicus.UCSC.rn5.refGene’, ‘TxDb.Rnorvegicus.UCSC.rn6.refGene’

bioCancer

Version:
Source code: ???
URL: https://tidyselect.r-lib.org, https://github.com/r-lib/tidyselect
BugReports: https://github.com/r-lib/tidyselect/issues
Number of recursive dependencies: 0

Run revdep_details(,"") for more info


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘DO.db’, ‘org.Hs.eg.db’, ‘reactome.db’


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘DO.db’, ‘org.Hs.eg.db’, ‘reactome.db’

BiocOncoTK

Version:
Source code: ???
URL: https://tidyselect.r-lib.org, https://github.com/r-lib/tidyselect
BugReports: https://github.com/r-lib/tidyselect/issues
Number of recursive dependencies: 0

Run revdep_details(,"") for more info


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘EnsDb.Hsapiens.v75’, ‘FDb.InfiniumMethylation.hg19’, ‘org.Hs.eg.db’, ‘TxDb.Hsapiens.UCSC.hg18.knownGene’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘EnsDb.Hsapiens.v75’, ‘FDb.InfiniumMethylation.hg19’, ‘org.Hs.eg.db’, ‘TxDb.Hsapiens.UCSC.hg18.knownGene’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’

brunnermunzel

Version: 1.4.1
Source code: https://github.com/cran/brunnermunzel
URL: https://github.com/toshi-ara/brunnermunzel
BugReports: https://github.com/toshi-ara/brunnermunzel/issues/
Date/Publication: 2020-01-08 00:50:05 UTC
Number of recursive dependencies: 67

Run revdep_details(,"brunnermunzel") for more info

checking whether package ‘brunnermunzel’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/brunnermunzel/new/brunnermunzel.Rcheck/00install.out’ for details.

* installing *source* package ‘brunnermunzel’ ...
** package ‘brunnermunzel’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c Rf_wrapper.c -o Rf_wrapper.o
gfortran-8  -fPIC  -Wall -g -O2  -c bm_permutation_stat.f -o bm_permutation_stat.o
make: gfortran-8: No such file or directory
make: *** [bm_permutation_stat.o] Error 1
ERROR: compilation failed for package ‘brunnermunzel’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/brunnermunzel/new/brunnermunzel.Rcheck/brunnermunzel’

* installing *source* package ‘brunnermunzel’ ...
** package ‘brunnermunzel’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c Rf_wrapper.c -o Rf_wrapper.o
gfortran-8  -fPIC  -Wall -g -O2  -c bm_permutation_stat.f -o bm_permutation_stat.o
make: gfortran-8: No such file or directory
make: *** [bm_permutation_stat.o] Error 1
ERROR: compilation failed for package ‘brunnermunzel’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/brunnermunzel/old/brunnermunzel.Rcheck/brunnermunzel’

CAGEWorkflow

Version:
Source code: ???
URL: https://tidyselect.r-lib.org, https://github.com/r-lib/tidyselect
BugReports: https://github.com/r-lib/tidyselect/issues
Number of recursive dependencies: 0

Run revdep_details(,"") for more info


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘BSgenome.Mmusculus.UCSC.mm9’, ‘JASPAR2016’, ‘nanotubes’, ‘org.Hs.eg.db’, ‘org.Mm.eg.db’, ‘TxDb.Mmusculus.UCSC.mm9.knownGene’


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘BSgenome.Mmusculus.UCSC.mm9’, ‘JASPAR2016’, ‘nanotubes’, ‘org.Hs.eg.db’, ‘org.Mm.eg.db’, ‘TxDb.Mmusculus.UCSC.mm9.knownGene’

Cardinal

Version: 2.2.6
Source code: https://github.com/cran/Cardinal
URL: http://www.cardinalmsi.org
Date/Publication: 2019-05-22
Number of recursive dependencies: 84

Run revdep_details(,"Cardinal") for more info

checking whether package ‘Cardinal’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/Cardinal/new/Cardinal.Rcheck/00install.out’ for details.

* installing *source* package ‘Cardinal’ ...
** using staged installation
** libs
clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -mtune=core2 -O3 -c DIP.cpp -o DIP.o
In file included from DIP.cpp:2:
In file included from ./Cardinal.h:9:
In file included from /Library/Frameworks/R.framework/Resources/include/Rinternals.h:36:
In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/cstddef:45:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/__nullptr:35:5: error: templates must have C++ linkage
    template <class _Tp>
    ^~~~~~~~~~~~~~~~~~~~
./Cardinal.h:7:1: note: extern "C" language linkage specification begins here
extern "C"
^
In file included from DIP.cpp:2:
In file included from ./Cardinal.h:9:
In file included from /Library/Frameworks/R.framework/Resources/include/Rinternals.h:36:
In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/cstddef:45:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/__nullptr:39:5: error: templates must have C++ linkage
    template <class _Tp, class _Up>
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./Cardinal.h:7:1: note: extern "C" language linkage specification begins here
extern "C"
^
DIP.cpp:12:14: warning: variable length arrays are a C99 feature [-Wvla-extension]
        double gamma[size];
                    ^
DIP.cpp:12:14: warning: variable length arrays are a C99 feature [-Wvla-extension]
DIP.cpp:142:11: note: in instantiation of function template specialization 'gaussian_filter<int>' requested here
                        return gaussian_filter<int>(x, Rf_asInteger(r), Rf_asReal(sd), R_NilValue);
                               ^
DIP.cpp:12:14: warning: variable length arrays are a C99 feature [-Wvla-extension]
        double gamma[size];
                    ^
DIP.cpp:144:11: note: in instantiation of function template specialization 'gaussian_filter<double>' requested here
                        return gaussian_filter<double>(x, Rf_asInteger(r), Rf_asReal(sd), R_NilValue);
                               ^
3 warnings and 2 errors generated.
make: *** [DIP.o] Error 1
ERROR: compilation failed for package ‘Cardinal’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/Cardinal/new/Cardinal.Rcheck/Cardinal’

* installing *source* package ‘Cardinal’ ...
** using staged installation
** libs
clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -mtune=core2 -O3 -c DIP.cpp -o DIP.o
In file included from DIP.cpp:2:
In file included from ./Cardinal.h:9:
In file included from /Library/Frameworks/R.framework/Resources/include/Rinternals.h:36:
In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/cstddef:45:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/__nullptr:35:5: error: templates must have C++ linkage
    template <class _Tp>
    ^~~~~~~~~~~~~~~~~~~~
./Cardinal.h:7:1: note: extern "C" language linkage specification begins here
extern "C"
^
In file included from DIP.cpp:2:
In file included from ./Cardinal.h:9:
In file included from /Library/Frameworks/R.framework/Resources/include/Rinternals.h:36:
In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/cstddef:45:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/__nullptr:39:5: error: templates must have C++ linkage
    template <class _Tp, class _Up>
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./Cardinal.h:7:1: note: extern "C" language linkage specification begins here
extern "C"
^
DIP.cpp:12:14: warning: variable length arrays are a C99 feature [-Wvla-extension]
        double gamma[size];
                    ^
DIP.cpp:12:14: warning: variable length arrays are a C99 feature [-Wvla-extension]
DIP.cpp:142:11: note: in instantiation of function template specialization 'gaussian_filter<int>' requested here
                        return gaussian_filter<int>(x, Rf_asInteger(r), Rf_asReal(sd), R_NilValue);
                               ^
DIP.cpp:12:14: warning: variable length arrays are a C99 feature [-Wvla-extension]
        double gamma[size];
                    ^
DIP.cpp:144:11: note: in instantiation of function template specialization 'gaussian_filter<double>' requested here
                        return gaussian_filter<double>(x, Rf_asInteger(r), Rf_asReal(sd), R_NilValue);
                               ^
3 warnings and 2 errors generated.
make: *** [DIP.o] Error 1
ERROR: compilation failed for package ‘Cardinal’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/Cardinal/old/Cardinal.Rcheck/Cardinal’

CATALYST

Version: 1.8.7
Source code: https://github.com/cran/CATALYST
URL: https://github.com/HelenaLC/CATALYST
BugReports: https://github.com/HelenaLC/CATALYST/issues
Date/Publication: 2019-10-14
Number of recursive dependencies: 204

Run revdep_details(,"CATALYST") for more info

checking examples ... ERROR ``` ...

Name: runDR

Title: Perform dim. reduction on a 'daFrame'

Aliases: runDR runDR,daFrame-method

** Examples

data(PBMC_fs, PBMC_panel, PBMC_md) daf <- daFrame(PBMC_fs, PBMC_panel, PBMC_md) daf <- cluster(daf) o running FlowSOM clustering... o running ConsensusClusterPlus metaclustering...

PCA on all cells

daf <- runDR(daf, "PCA")

UMAP on 1000 random cells

daf <- runDR(daf, "UMAP", rows_to_use = sample(nrow(daf), 1e3)) Error in loadNamespace(name) : there is no package called ‘uwot’ Calls: runDR ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted ```
R CMD check timed out
checking installed package size ... NOTE installed size is 10.5Mb sub-directories of 1Mb or more: data 3.1Mb doc 6.1Mb
checking R code for possible problems ... NOTE plotClusterHeatmap,daFrame : <anonymous>: no visible binding for global variable ‘cluster_id’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/CATALYST/new/CATALYST.Rcheck/00_pkg_src/CATALYST/R/plotClusterHeatmap.R:197) Undefined global functions or variables: cluster_id

ChIPseeker

Version:
Source code: ???
URL: https://tidyselect.r-lib.org, https://github.com/r-lib/tidyselect
BugReports: https://github.com/r-lib/tidyselect/issues
Number of recursive dependencies: 0

Run revdep_details(,"") for more info


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘DO.db’, ‘org.Hs.eg.db’, ‘reactome.db’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘DO.db’, ‘org.Hs.eg.db’, ‘reactome.db’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’

cicero

Version: 1.2.0
Source code: https://github.com/cran/cicero
Date/Publication: 2019-05-02
Number of recursive dependencies: 198

Run revdep_details(,"cicero") for more info

R CMD check timed out
checking R code for possible problems ... NOTE aggregate_nearby_peaks: no visible binding for global variable 'val' (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/cicero/new/cicero.Rcheck/00_pkg_src/cicero/R/aggregate.R:37) assemble_connections: no visible binding for global variable 'value' (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/cicero/new/cicero.Rcheck/00_pkg_src/cicero/R/runCicero.R:640-641) find_overlapping_ccans: no visible binding for global variable 'CCAN' (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/cicero/new/cicero.Rcheck/00_pkg_src/cicero/R/runCicero.R:919-922) generate_windows: no visible binding for global variable 'V1' (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/cicero/new/cicero.Rcheck/00_pkg_src/cicero/R/runCicero.R:663-667) plot_accessibility_in_pseudotime: no visible binding for global variable 'f_id' (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/cicero/new/cicero.Rcheck/00_pkg_src/cicero/R/plotting.R:676-695) Undefined global functions or variables: CCAN f_id V1 val value

CINdex

Version:
Source code: ???
URL: https://tidyselect.r-lib.org, https://github.com/r-lib/tidyselect
BugReports: https://github.com/r-lib/tidyselect/issues
Number of recursive dependencies: 0

Run revdep_details(,"") for more info


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘DO.db’, ‘Homo.sapiens’, ‘org.Hs.eg.db’, ‘pd.genomewidesnp.6’, ‘reactome.db’, ‘TxDb.Hsapiens.UCSC.hg18.knownGene’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘DO.db’, ‘Homo.sapiens’, ‘org.Hs.eg.db’, ‘pd.genomewidesnp.6’, ‘reactome.db’, ‘TxDb.Hsapiens.UCSC.hg18.knownGene’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’

clustermq

Version: 0.8.8.1
Source code: https://github.com/cran/clustermq
URL: https://github.com/mschubert/clustermq
BugReports: https://github.com/mschubert/clustermq/issues
Date/Publication: 2019-12-18 10:10:02 UTC
Number of recursive dependencies: 107

Run revdep_details(,"clustermq") for more info

R CMD check timed out
checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘purrr’ ‘R6’ All declared Imports should be used.

codemetar

Version: 0.1.8
Source code: https://github.com/cran/codemetar
URL: https://github.com/ropensci/codemetar, https://ropensci.github.io/codemetar
BugReports: https://github.com/ropensci/codemetar/issues
Date/Publication: 2019-04-22 04:20:03 UTC
Number of recursive dependencies: 80

Run revdep_details(,"codemetar") for more info

R CMD check timed out
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘memoise’ All declared Imports should be used.

corrcoverage

Version: 1.2.1
Source code: https://github.com/cran/corrcoverage
URL: https://annahutch.github.io/corrcoverage
BugReports: https://github.com/annahutch/corrcoverage/issues
Date/Publication: 2019-12-06 23:20:12 UTC
Number of recursive dependencies: 69

Run revdep_details(,"corrcoverage") for more info

checking whether package ‘corrcoverage’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/corrcoverage/new/corrcoverage.Rcheck/00install.out’ for details.

* installing *source* package ‘corrcoverage’ ...
** package ‘corrcoverage’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/corrcoverage/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/corrcoverage/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang: error: unsupported option '-fopenmp'
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘corrcoverage’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/corrcoverage/new/corrcoverage.Rcheck/corrcoverage’

* installing *source* package ‘corrcoverage’ ...
** package ‘corrcoverage’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/corrcoverage/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/corrcoverage/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang: error: unsupported option '-fopenmp'
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘corrcoverage’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/corrcoverage/old/corrcoverage.Rcheck/corrcoverage’

DepthProc

Version: 2.1.2
Source code: https://github.com/cran/DepthProc
URL: https://www.depthproc.zstat.pl/, https://github.com/zzawadz/DepthProc
BugReports: https://github.com/zzawadz/DepthProc/issues
Date/Publication: 2020-01-09 12:40:07 UTC
Number of recursive dependencies: 119

Run revdep_details(,"DepthProc") for more info

checking whether package ‘DepthProc’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/DepthProc/new/DepthProc.Rcheck/00install.out’ for details.

* installing *source* package ‘DepthProc’ ...
** package ‘DepthProc’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/DepthProc/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/DepthProc/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c Depth.cpp -o Depth.o
clang: error: unsupported option '-fopenmp'
make: *** [Depth.o] Error 1
ERROR: compilation failed for package ‘DepthProc’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/DepthProc/new/DepthProc.Rcheck/DepthProc’

* installing *source* package ‘DepthProc’ ...
** package ‘DepthProc’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/DepthProc/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/DepthProc/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c Depth.cpp -o Depth.o
clang: error: unsupported option '-fopenmp'
make: *** [Depth.o] Error 1
ERROR: compilation failed for package ‘DepthProc’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/DepthProc/old/DepthProc.Rcheck/DepthProc’

DiffBind

Version: 2.12.0
Source code: https://github.com/cran/DiffBind
Date/Publication: 2019-05-02
Number of recursive dependencies: 166

Run revdep_details(,"DiffBind") for more info

R CMD check timed out
checking whether package ‘DiffBind’ can be installed ... WARNING Found the following significant warnings: /Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/DiffBind/Rhtslib/include/htslib/hts.h:655:1: warning: 'long long' is a C++11 extension [-Wc++11-long-long] /Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/DiffBind/Rhtslib/include/htslib/hts.h:824:15: warning: 'long long' is a C++11 extension [-Wc++11-long-long] /Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/DiffBind/Rhtslib/include/htslib/hts.h:825:15: warning: 'long long' is a C++11 extension [-Wc++11-long-long] /Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/DiffBind/Rhtslib/include/htslib/hts.h:825:53: warning: 'long long' is a C++11 extension [-Wc++11-long-long] /Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/DiffBind/Rhtslib/include/htslib/hts.h:826:18: warning: 'long long' is a C++11 extension [-Wc++11-long-long] /Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/DiffBind/Rhtslib/include/htslib/hts.h:826:55: warning: 'long long' is a C++11 extension [-Wc++11-long-long] See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/DiffBind/new/DiffBind.Rcheck/00install.out’ for details.
checking package dependencies ... NOTE Packages which this enhances but not available for checking: 'rgl', 'XLConnect'
checking R code for possible problems ... NOTE pv.DBAplotVolcano: no visible binding for global variable ‘Fold’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/DiffBind/new/DiffBind.Rcheck/00_pkg_src/DiffBind/R/analyze.R:1370-1373) pv.DBAplotVolcano: no visible binding for global variable ‘Legend’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/DiffBind/new/DiffBind.Rcheck/00_pkg_src/DiffBind/R/analyze.R:1370-1373) pv.DBAplotVolcano: no visible binding for global variable ‘Fold’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/DiffBind/new/DiffBind.Rcheck/00_pkg_src/DiffBind/R/analyze.R:1379-1382) Undefined global functions or variables: Fold Legend
checking contents of ‘data’ directory ... NOTE ``` Output for data("tamoxifen_analysis", package = "DiffBind"):

Output for data("tamoxifen_counts", package = "DiffBind"):

```
checking compiled code ... NOTE ``` File ‘DiffBind/libs/DiffBind.so’: Found ‘___stderrp’, possibly from ‘stderr’ (C) Object: ‘sam.o’

Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. ```

downscaledl

Version: 1.0
Source code: https://github.com/cran/downscaledl
Date/Publication: 2019-10-24 16:20:10 UTC
Number of recursive dependencies: 44

Run revdep_details(,"downscaledl") for more info

checking whether package ‘downscaledl’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/downscaledl/new/downscaledl.Rcheck/00install.out’ for details.

* installing *source* package ‘downscaledl’ ...
** package ‘downscaledl’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/downscaledl/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/downscaledl/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang: error: unsupported option '-fopenmp'
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘downscaledl’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/downscaledl/new/downscaledl.Rcheck/downscaledl’

* installing *source* package ‘downscaledl’ ...
** package ‘downscaledl’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/downscaledl/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/downscaledl/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang: error: unsupported option '-fopenmp'
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘downscaledl’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/downscaledl/old/downscaledl.Rcheck/downscaledl’

fastLink

Version: 0.5.0
Source code: https://github.com/cran/fastLink
BugReports: https://github.com/kosukeimai/fastLink/issues
Date/Publication: 2018-11-12 16:50:02 UTC
Number of recursive dependencies: 73

Run revdep_details(,"fastLink") for more info

checking whether package ‘fastLink’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/fastLink/new/fastLink.Rcheck/00install.out’ for details.

* installing *source* package ‘fastLink’ ...
** package ‘fastLink’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/fastLink/RcppArmadillo/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/fastLink/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/fastLink/RcppEigen/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -mtune=core2 -O3 -c RcppExports.cpp -o RcppExports.o
clang: error: unsupported option '-fopenmp'
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘fastLink’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/fastLink/new/fastLink.Rcheck/fastLink’

* installing *source* package ‘fastLink’ ...
** package ‘fastLink’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/fastLink/RcppArmadillo/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/fastLink/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/fastLink/RcppEigen/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -mtune=core2 -O3 -c RcppExports.cpp -o RcppExports.o
clang: error: unsupported option '-fopenmp'
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘fastLink’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/fastLink/old/fastLink.Rcheck/fastLink’

FSelectorRcpp

Version:
Source code: ???
URL: https://tidyselect.r-lib.org, https://github.com/r-lib/tidyselect
BugReports: https://github.com/r-lib/tidyselect/issues
Number of recursive dependencies: 0

Run revdep_details(,"") for more info


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
mvtnorm 1.0-11 1.0-12              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source package ‘RTCGA.rnaseq’


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
mvtnorm 1.0-11 1.0-12              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source package ‘RTCGA.rnaseq’

gap

Version: 1.2.1
Source code: https://github.com/cran/gap
URL: https://github.com/jinghuazhao/R
BugReports: https://github.com/jinghuazhao/R/issues
Date/Publication: 2019-06-05 12:00:06 UTC
Number of recursive dependencies: 132

Run revdep_details(,"gap") for more info

checking whether package ‘gap’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/gap/new/gap.Rcheck/00install.out’ for details.

* installing *source* package ‘gap’ ...
** package ‘gap’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c 2k.c -o 2k.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c 2ld.c -o 2ld.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c cline.c -o cline.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c gcontrol_c.c -o gcontrol_c.o
gcontrol_c.c:757:53: warning: if statement has empty body [-Wempty-body]
      if(i>=*burn && j==0) /*printf("%14.9f \n",p)*/;
                                                    ^
gcontrol_c.c:757:53: note: put the semicolon on a separate line to silence this warning
1 warning generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c gcx.c -o gcx.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c gif_c.c -o gif_c.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c hap_c.c -o hap_c.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c hwe.hardy.c -o hwe.hardy.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c kin.morgan.c -o kin.morgan.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c makeped_c.c -o makeped_c.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c mia.c -o mia.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c muvar.c -o muvar.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c package_native_routine_registration_skeleton.c -o package_native_routine_registration_skeleton.o
gfortran-8  -fPIC  -Wall -g -O2  -c pfc.f -o pfc.o
make: gfortran-8: No such file or directory
make: *** [pfc.o] Error 1
ERROR: compilation failed for package ‘gap’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/gap/new/gap.Rcheck/gap’

* installing *source* package ‘gap’ ...
** package ‘gap’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c 2k.c -o 2k.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c 2ld.c -o 2ld.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c cline.c -o cline.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c gcontrol_c.c -o gcontrol_c.o
gcontrol_c.c:757:53: warning: if statement has empty body [-Wempty-body]
      if(i>=*burn && j==0) /*printf("%14.9f \n",p)*/;
                                                    ^
gcontrol_c.c:757:53: note: put the semicolon on a separate line to silence this warning
1 warning generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c gcx.c -o gcx.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c gif_c.c -o gif_c.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c hap_c.c -o hap_c.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c hwe.hardy.c -o hwe.hardy.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c kin.morgan.c -o kin.morgan.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c makeped_c.c -o makeped_c.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c mia.c -o mia.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c muvar.c -o muvar.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c package_native_routine_registration_skeleton.c -o package_native_routine_registration_skeleton.o
gfortran-8  -fPIC  -Wall -g -O2  -c pfc.f -o pfc.o
make: gfortran-8: No such file or directory
make: *** [pfc.o] Error 1
ERROR: compilation failed for package ‘gap’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/gap/old/gap.Rcheck/gap’

GAPGOM

Version:
Source code: ???
URL: https://tidyselect.r-lib.org, https://github.com/r-lib/tidyselect
BugReports: https://github.com/r-lib/tidyselect/issues
Number of recursive dependencies: 0

Run revdep_details(,"") for more info


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘org.Ag.eg.db’, ‘org.At.tair.db’, ‘org.Bt.eg.db’, ‘org.Ce.eg.db’, ‘org.Cf.eg.db’, ‘org.Dm.eg.db’, ‘org.Dr.eg.db’, ‘org.EcK12.eg.db’, ‘org.EcSakai.eg.db’, ‘org.Gg.eg.db’, ‘org.Mmu.eg.db’, ‘org.Pf.plasmo.db’, ‘org.Pt.eg.db’, ‘org.Rn.eg.db’, ‘org.Sc.sgd.db’, ‘org.Ss.eg.db’, ‘org.Xl.eg.db’


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘org.Ag.eg.db’, ‘org.At.tair.db’, ‘org.Bt.eg.db’, ‘org.Ce.eg.db’, ‘org.Cf.eg.db’, ‘org.Dm.eg.db’, ‘org.Dr.eg.db’, ‘org.EcK12.eg.db’, ‘org.EcSakai.eg.db’, ‘org.Gg.eg.db’, ‘org.Mmu.eg.db’, ‘org.Pf.plasmo.db’, ‘org.Pt.eg.db’, ‘org.Rn.eg.db’, ‘org.Sc.sgd.db’, ‘org.Ss.eg.db’, ‘org.Xl.eg.db’

gastempt

Version: 0.4.4
Source code: https://github.com/cran/gastempt
URL: http://github.com/dmenne/gastempt
BugReports: http://github.com/dmenne/gastempt/issues
Date/Publication: 2019-03-06 16:32:41 UTC
Number of recursive dependencies: 90

Run revdep_details(,"gastempt") for more info

checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

R CMD check timed out
checking installed package size ... NOTE installed size is 7.3Mb sub-directories of 1Mb or more: libs 6.9Mb
checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘methods’ ‘rstantools’ All declared Imports should be used.

geneXtendeR

Version:
Source code: ???
URL: https://tidyselect.r-lib.org, https://github.com/r-lib/tidyselect
BugReports: https://github.com/r-lib/tidyselect/issues
Number of recursive dependencies: 0

Run revdep_details(,"") for more info


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘org.Ag.eg.db’, ‘org.Bt.eg.db’, ‘org.Ce.eg.db’, ‘org.Cf.eg.db’, ‘org.Dm.eg.db’, ‘org.Dr.eg.db’, ‘org.Gg.eg.db’, ‘org.Pt.eg.db’, ‘org.Rn.eg.db’, ‘org.Sc.sgd.db’, ‘org.Ss.eg.db’, ‘org.Xl.eg.db’


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘org.Ag.eg.db’, ‘org.Bt.eg.db’, ‘org.Ce.eg.db’, ‘org.Cf.eg.db’, ‘org.Dm.eg.db’, ‘org.Dr.eg.db’, ‘org.Gg.eg.db’, ‘org.Pt.eg.db’, ‘org.Rn.eg.db’, ‘org.Sc.sgd.db’, ‘org.Ss.eg.db’, ‘org.Xl.eg.db’

gQTLstats

Version: 1.16.0
Source code: https://github.com/cran/gQTLstats
Date/Publication: 2019-05-02
Number of recursive dependencies: 195

Run revdep_details(,"gQTLstats") for more info

R CMD check timed out
checking installed package size ... NOTE installed size is 65.8Mb sub-directories of 1Mb or more: data 11.0Mb doc 1.1Mb registries 18.8Mb vcf 33.8Mb
checking R code for possible problems ... NOTE ... TransStore: no visible binding for global variable ‘i’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/gQTLstats/new/gQTLstats.Rcheck/00_pkg_src/gQTLstats/R/transChunk.R:111-112) TransStore : <anonymous>: no visible binding for global variable ‘i’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/gQTLstats/new/gQTLstats.Rcheck/00_pkg_src/gQTLstats/R/transChunk.R:111-112) transTable: no visible binding for global variable ‘i’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/gQTLstats/new/gQTLstats.Rcheck/00_pkg_src/gQTLstats/R/transChunk.R:55) transTable: no visible binding for global variable ‘i’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/gQTLstats/new/gQTLstats.Rcheck/00_pkg_src/gQTLstats/R/transChunk.R:58-59) tsByRank_sing: no visible binding for global variable ‘i’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/gQTLstats/new/gQTLstats.Rcheck/00_pkg_src/gQTLstats/R/statsByRank.R:19) tsByRank_sing : <anonymous>: no visible binding for global variable ‘i’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/gQTLstats/new/gQTLstats.Rcheck/00_pkg_src/gQTLstats/R/statsByRank.R:20) boxswarm,SnpToGeneQTL: no visible binding for global variable ‘g1’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/gQTLstats/new/gQTLstats.Rcheck/00_pkg_src/gQTLstats/R/queryVCF.R:162) boxswarm,SnpToGeneQTL: no visible binding for global variable ‘g1’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/gQTLstats/new/gQTLstats.Rcheck/00_pkg_src/gQTLstats/R/queryVCF.R:163) Undefined global functions or variables: assoc calls ch chisq criterion DNAStringSetList ex exonsBy experiments g1 geom_boxplot gt i id maf MAF mindist ml10fdr nth permScore_1 permScore_2 permScore_3 probeid snp state stateid TabixFile TxDb value x
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘MultiAssayExperiment’
checking contents of ‘data’ directory ... NOTE ``` Output for data("bigfiltFDR", package = "gQTLstats"):

Output for data("bigrawFDR", package = "gQTLstats"):

Output for data("filtFDR", package = "gQTLstats"):

Output for data("rawFDR", package = "gQTLstats"):

Output for data("sensByProbe", package = "gQTLstats"):

```
checking data for non-ASCII characters ... NOTE Note: found 8 marked Latin-1 strings Note: found 12 marked UTF-8 strings

graphicalVAR

Version: 0.2.2
Source code: https://github.com/cran/graphicalVAR
Date/Publication: 2018-06-16 19:28:45 UTC
Number of recursive dependencies: 107

Run revdep_details(,"graphicalVAR") for more info

checking whether package ‘graphicalVAR’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/graphicalVAR/new/graphicalVAR.Rcheck/00install.out’ for details.

* installing *source* package ‘graphicalVAR’ ...
** package ‘graphicalVAR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/graphicalVAR/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/graphicalVAR/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang: error: unsupported option '-fopenmp'
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘graphicalVAR’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/graphicalVAR/new/graphicalVAR.Rcheck/graphicalVAR’

* installing *source* package ‘graphicalVAR’ ...
** package ‘graphicalVAR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/graphicalVAR/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/graphicalVAR/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang: error: unsupported option '-fopenmp'
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘graphicalVAR’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/graphicalVAR/old/graphicalVAR.Rcheck/graphicalVAR’

grasp2db

Version: 1.1.0
Source code: https://github.com/cran/grasp2db
Number of recursive dependencies: 100

Run revdep_details(,"grasp2db") for more info

R CMD check timed out
checking for missing documentation entries ... WARNING Undocumented code objects: ‘checkAnti’ ‘getJoinCompatible’ ‘GRASP2’ Undocumented data sets: ‘mml10p_nox’ ‘uniqueGexNames2.0’ ‘uniquePPDnames2.0’ All user-level objects in a package should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual.
checking data for non-ASCII characters ... WARNING Warning: found non-ASCII string 'Beh<e7>et's disease' in object 'uniquePPDnames2.0'
checking data for ASCII and uncompressed saves ... WARNING ```

Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress mml10p_nox.rda 7.1Mb 2.8Mb xz uniquePPDnames2.0.rda 17Kb 15Kb bzip2 ```
checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘AnnotationHubData’
checking installed package size ... NOTE installed size is 7.6Mb sub-directories of 1Mb or more: data 7.1Mb
checking DESCRIPTION meta-information ... NOTE License components with restrictions not permitted: Artistic-2.0 + file LICENSE
checking R code for possible problems ... NOTE .grasp2ToAnnotationHub: no visible global function definition for ‘outputFile’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/grasp2db/new/grasp2db.Rcheck/00_pkg_src/grasp2db/R/db_AnnotationHub.R:39) .grasp2ToAnnotationHub: no visible global function definition for ‘outputFile’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/grasp2db/new/grasp2db.Rcheck/00_pkg_src/grasp2db/R/db_AnnotationHub.R:40) checkAnti: no visible binding for global variable ‘chr_hg19’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/grasp2db/new/grasp2db.Rcheck/00_pkg_src/grasp2db/R/doanti.R:19-20) getJoinCompatible: no visible binding for global variable ‘gwrngs19’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/grasp2db/new/grasp2db.Rcheck/00_pkg_src/grasp2db/R/doanti.R:7) Undefined global functions or variables: chr_hg19 gwrngs19 outputFile

heatwaveR

Version: 0.4.2
Source code: https://github.com/cran/heatwaveR
URL: https://robwschlegel.github.io/heatwaveR/index.html, https://github.com/robwschlegel/heatwaveR
BugReports: https://github.com/robwschlegel/heatwaveR/issues
Date/Publication: 2019-12-01 21:30:06 UTC
Number of recursive dependencies: 107

Run revdep_details(,"heatwaveR") for more info

checking whether package ‘heatwaveR’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/heatwaveR/new/heatwaveR.Rcheck/00install.out’ for details.

* installing *source* package ‘heatwaveR’ ...
** package ‘heatwaveR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/heatwaveR/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/heatwaveR/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang: error: unsupported option '-fopenmp'
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘heatwaveR’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/heatwaveR/new/heatwaveR.Rcheck/heatwaveR’

* installing *source* package ‘heatwaveR’ ...
** package ‘heatwaveR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/heatwaveR/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/heatwaveR/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang: error: unsupported option '-fopenmp'
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘heatwaveR’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/heatwaveR/old/heatwaveR.Rcheck/heatwaveR’

ICAMS

Version:
Source code: ???
URL: https://tidyselect.r-lib.org, https://github.com/r-lib/tidyselect
BugReports: https://github.com/r-lib/tidyselect/issues
Number of recursive dependencies: 0

Run revdep_details(,"") for more info


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘BSgenome.Hsapiens.1000genomes.hs37d5’, ‘BSgenome.Mmusculus.UCSC.mm10’


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘BSgenome.Hsapiens.1000genomes.hs37d5’, ‘BSgenome.Mmusculus.UCSC.mm10’

idefix

Version: 0.4.0
Source code: https://github.com/cran/idefix
URL: https://github.com/traets/idefix
Date/Publication: 2019-08-01 16:40:12 UTC
Number of recursive dependencies: 72

Run revdep_details(,"idefix") for more info

checking whether package ‘idefix’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/idefix/new/idefix.Rcheck/00install.out’ for details.

* installing *source* package ‘idefix’ ...
** package ‘idefix’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/idefix/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/idefix/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c InfoDes_cpp.cpp -o InfoDes_cpp.o
clang: error: unsupported option '-fopenmp'
make: *** [InfoDes_cpp.o] Error 1
ERROR: compilation failed for package ‘idefix’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/idefix/new/idefix.Rcheck/idefix’

* installing *source* package ‘idefix’ ...
** package ‘idefix’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/idefix/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/idefix/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c InfoDes_cpp.cpp -o InfoDes_cpp.o
clang: error: unsupported option '-fopenmp'
make: *** [InfoDes_cpp.o] Error 1
ERROR: compilation failed for package ‘idefix’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/idefix/old/idefix.Rcheck/idefix’

imager

Version: 0.41.2
Source code: https://github.com/cran/imager
URL: http://dahtah.github.io/imager, https://github.com/dahtah/imager
BugReports: https://github.com/dahtah/imager/issues
Date/Publication: 2019-01-23 10:43:50 UTC
Number of recursive dependencies: 87

Run revdep_details(,"imager") for more info

checking whether package ‘imager’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/imager/new/imager.Rcheck/00install.out’ for details.

* installing *source* package ‘imager’ ...
** package ‘imager’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for X... no
configure: error: X11 not found but required, configure aborted.
ERROR: configuration failed for package ‘imager’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/imager/new/imager.Rcheck/imager’

* installing *source* package ‘imager’ ...
** package ‘imager’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for X... no
configure: error: X11 not found but required, configure aborted.
ERROR: configuration failed for package ‘imager’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/imager/old/imager.Rcheck/imager’

iRF

Version: 2.0.0
Source code: https://github.com/cran/iRF
URL: https://arxiv.org/abs/1706.08457
Date/Publication: 2017-07-26 04:57:45 UTC
Number of recursive dependencies: 76

Run revdep_details(,"iRF") for more info

checking whether package ‘iRF’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/iRF/new/iRF.Rcheck/00install.out’ for details.

* installing *source* package ‘iRF’ ...
** package ‘iRF’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/iRF/Rcpp/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c ExportedFunctionsRIT.cpp -o ExportedFunctionsRIT.o
clang: error: unsupported option '-fopenmp'
make: *** [ExportedFunctionsRIT.o] Error 1
ERROR: compilation failed for package ‘iRF’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/iRF/new/iRF.Rcheck/iRF’

* installing *source* package ‘iRF’ ...
** package ‘iRF’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/iRF/Rcpp/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c ExportedFunctionsRIT.cpp -o ExportedFunctionsRIT.o
clang: error: unsupported option '-fopenmp'
make: *** [ExportedFunctionsRIT.o] Error 1
ERROR: compilation failed for package ‘iRF’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/iRF/old/iRF.Rcheck/iRF’

lpirfs

Version: 0.1.7
Source code: https://github.com/cran/lpirfs
BugReports: https://github.com/adaemmerp/lpirfs/issues
Date/Publication: 2019-11-25 09:20:06 UTC
Number of recursive dependencies: 107

Run revdep_details(,"lpirfs") for more info

checking whether package ‘lpirfs’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/lpirfs/new/lpirfs.Rcheck/00install.out’ for details.

* installing *source* package ‘lpirfs’ ...
** package ‘lpirfs’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/lpirfs/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/lpirfs/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang: error: unsupported option '-fopenmp'
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘lpirfs’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/lpirfs/new/lpirfs.Rcheck/lpirfs’

* installing *source* package ‘lpirfs’ ...
** package ‘lpirfs’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/lpirfs/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/lpirfs/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang: error: unsupported option '-fopenmp'
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘lpirfs’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/lpirfs/old/lpirfs.Rcheck/lpirfs’

miceFast

Version: 0.5.1
Source code: https://github.com/cran/miceFast
URL: https://github.com/Polkas/miceFast
BugReports: https://github.com/Polkas/miceFast/issues
Date/Publication: 2019-08-19 22:50:02 UTC
Number of recursive dependencies: 112

Run revdep_details(,"miceFast") for more info

checking whether package ‘miceFast’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/miceFast/new/miceFast.Rcheck/00install.out’ for details.

* installing *source* package ‘miceFast’ ...
** package ‘miceFast’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/miceFast/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/miceFast/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c R_funs.cpp -o R_funs.o
clang: error: unsupported option '-fopenmp'
make: *** [R_funs.o] Error 1
ERROR: compilation failed for package ‘miceFast’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/miceFast/new/miceFast.Rcheck/miceFast’

* installing *source* package ‘miceFast’ ...
** package ‘miceFast’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/miceFast/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/miceFast/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c R_funs.cpp -o R_funs.o
clang: error: unsupported option '-fopenmp'
make: *** [R_funs.o] Error 1
ERROR: compilation failed for package ‘miceFast’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/miceFast/old/miceFast.Rcheck/miceFast’

MixMatrix

Version: 0.2.4
Source code: https://github.com/cran/MixMatrix
URL: http://github.com/gzt/MixMatrix/, https://gzt.github.io/MixMatrix/
BugReports: http://github.com/gzt/MixMatrix/issues
Date/Publication: 2019-11-14 22:30:03 UTC
Number of recursive dependencies: 80

Run revdep_details(,"MixMatrix") for more info

checking whether package ‘MixMatrix’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/MixMatrix/new/MixMatrix.Rcheck/00install.out’ for details.

* installing *source* package ‘MixMatrix’ ...
** package ‘MixMatrix’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/MixMatrix/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/MixMatrix/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang: error: unsupported option '-fopenmp'
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘MixMatrix’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/MixMatrix/new/MixMatrix.Rcheck/MixMatrix’

* installing *source* package ‘MixMatrix’ ...
** package ‘MixMatrix’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/MixMatrix/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/MixMatrix/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang: error: unsupported option '-fopenmp'
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘MixMatrix’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/MixMatrix/old/MixMatrix.Rcheck/MixMatrix’

PAST

Version: 1.0.1
Source code: https://github.com/cran/PAST
URL: https://github.com/IGBB/past
BugReports: https://github.com/IGBB/past/issues
Date/Publication: 2019-08-07
Number of recursive dependencies: 87

Run revdep_details(,"PAST") for more info

R CMD check timed out
checking top-level files ... NOTE File LICENSE is not mentioned in the DESCRIPTION file.
checking R code for possible problems ... NOTE assign_SNPs_to_genes: no visible binding for global variable ‘Marker_original.x’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/PAST/new/PAST.Rcheck/00_pkg_src/PAST/R/assign_SNPs_to_genes.R:467-490) find_pathway_significance: no visible binding for global variable ‘gene_id’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/PAST/new/PAST.Rcheck/00_pkg_src/PAST/R/find_pathway_significance.R:126-128) load_GWAS_data: no visible binding for global variable ‘Chr’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/PAST/new/PAST.Rcheck/00_pkg_src/PAST/R/load_GWAS_data.R:35-50) load_GWAS_data: no visible binding for global variable ‘Pos’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/PAST/new/PAST.Rcheck/00_pkg_src/PAST/R/load_GWAS_data.R:35-50) Undefined global functions or variables: Chr gene_id Marker_original.x Pos

PathwaySplice

Version: 1.8.0
Source code: https://github.com/cran/PathwaySplice
Date/Publication: 2019-05-02
Number of recursive dependencies: 219

Run revdep_details(,"PathwaySplice") for more info

R CMD check timed out
checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences.
checking R code for possible problems ... NOTE ... (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/PathwaySplice/new/PathwaySplice.Rcheck/00_pkg_src/PathwaySplice/R/Run_pathwaysplice.R:1655-1665) compareResults2: no visible binding for global variable 'PathwaySplice' (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/PathwaySplice/new/PathwaySplice.Rcheck/00_pkg_src/PathwaySplice/R/Run_pathwaysplice.R:1655-1665) compareResults2: no visible global function definition for 'geom_point' (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/PathwaySplice/new/PathwaySplice.Rcheck/00_pkg_src/PathwaySplice/R/Run_pathwaysplice.R:1655-1665) compareResults2: no visible global function definition for 'geom_smooth' (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/PathwaySplice/new/PathwaySplice.Rcheck/00_pkg_src/PathwaySplice/R/Run_pathwaysplice.R:1655-1665) compareResults2: no visible global function definition for 'labs' (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/PathwaySplice/new/PathwaySplice.Rcheck/00_pkg_src/PathwaySplice/R/Run_pathwaysplice.R:1655-1665) compareResults2: no visible global function definition for 'scale_colour_manual' (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/PathwaySplice/new/PathwaySplice.Rcheck/00_pkg_src/PathwaySplice/R/Run_pathwaysplice.R:1655-1665) compareResults2: no visible global function definition for 'scale_shape_manual' (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/PathwaySplice/new/PathwaySplice.Rcheck/00_pkg_src/PathwaySplice/R/Run_pathwaysplice.R:1655-1665) netplot: no visible global function definition for 'get.col.scale' (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/PathwaySplice/new/PathwaySplice.Rcheck/00_pkg_src/PathwaySplice/R/Run_pathwaysplice.R:1692) Undefined global functions or variables: aes geom_point geom_smooth get.col.scale ggplot labs PathwaySplice PValue random_sampling_200k scale_colour_manual scale_shape_manual

poppr

Version: 2.8.3
Source code: https://github.com/cran/poppr
URL: https://grunwaldlab.github.io/poppr, https://github.com/grunwaldlab/poppr, https://grunwaldlab.github.io/Population_Genetics_in_R/
BugReports: https://github.com/grunwaldlab/poppr/issues
Date/Publication: 2019-06-18 16:21:21 UTC
Number of recursive dependencies: 110

Run revdep_details(,"poppr") for more info

checking whether package ‘poppr’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/poppr/new/poppr.Rcheck/00install.out’ for details.

* installing *source* package ‘poppr’ ...
** package ‘poppr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c adjust_missing.c -o adjust_missing.o
clang: error: unsupported option '-fopenmp'
make: *** [adjust_missing.o] Error 1
ERROR: compilation failed for package ‘poppr’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/poppr/new/poppr.Rcheck/poppr’

* installing *source* package ‘poppr’ ...
** package ‘poppr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c adjust_missing.c -o adjust_missing.o
clang: error: unsupported option '-fopenmp'
make: *** [adjust_missing.o] Error 1
ERROR: compilation failed for package ‘poppr’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/poppr/old/poppr.Rcheck/poppr’

psychonetrics

Version: 0.4.1
Source code: https://github.com/cran/psychonetrics
URL: http://psychonetrics.org/
BugReports: https://github.com/SachaEpskamp/psychonetrics/issues
Date/Publication: 2019-12-18 02:10:02 UTC
Number of recursive dependencies: 140

Run revdep_details(,"psychonetrics") for more info

checking whether package ‘psychonetrics’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/psychonetrics/new/psychonetrics.Rcheck/00install.out’ for details.

* installing *source* package ‘psychonetrics’ ...
** package ‘psychonetrics’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/psychonetrics/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/psychonetrics/RcppArmadillo/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/psychonetrics/pbv/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c 04_generalfit_loglik_fimlcpp.cpp -o 04_generalfit_loglik_fimlcpp.o
clang: error: unsupported option '-fopenmp'
make: *** [04_generalfit_loglik_fimlcpp.o] Error 1
ERROR: compilation failed for package ‘psychonetrics’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/psychonetrics/new/psychonetrics.Rcheck/psychonetrics’

* installing *source* package ‘psychonetrics’ ...
** package ‘psychonetrics’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/psychonetrics/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/psychonetrics/RcppArmadillo/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/psychonetrics/pbv/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c 04_generalfit_loglik_fimlcpp.cpp -o 04_generalfit_loglik_fimlcpp.o
clang: error: unsupported option '-fopenmp'
make: *** [04_generalfit_loglik_fimlcpp.o] Error 1
ERROR: compilation failed for package ‘psychonetrics’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/psychonetrics/old/psychonetrics.Rcheck/psychonetrics’

qgraph

Version: 1.6.4
Source code: https://github.com/cran/qgraph
URL: http://sachaepskamp.com/qgraph
BugReports: https://github.com/SachaEpskamp/qgraph
Date/Publication: 2019-11-15 15:20:06 UTC
Number of recursive dependencies: 103

Run revdep_details(,"qgraph") for more info

checking whether package ‘qgraph’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/qgraph/new/qgraph.Rcheck/00install.out’ for details.

* installing *source* package ‘qgraph’ ...
** package ‘qgraph’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/qgraph/Rcpp/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang: error: unsupported option '-fopenmp'
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘qgraph’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/qgraph/new/qgraph.Rcheck/qgraph’

* installing *source* package ‘qgraph’ ...
** package ‘qgraph’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/qgraph/Rcpp/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang: error: unsupported option '-fopenmp'
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘qgraph’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/qgraph/old/qgraph.Rcheck/qgraph’

resautonet

Version: 1.0
Source code: https://github.com/cran/resautonet
Date/Publication: 2019-03-16 23:00:08 UTC
Number of recursive dependencies: 41

Run revdep_details(,"resautonet") for more info

checking whether package ‘resautonet’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/resautonet/new/resautonet.Rcheck/00install.out’ for details.

* installing *source* package ‘resautonet’ ...
** package ‘resautonet’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/resautonet/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/resautonet/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang: error: unsupported option '-fopenmp'
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘resautonet’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/resautonet/new/resautonet.Rcheck/resautonet’

* installing *source* package ‘resautonet’ ...
** package ‘resautonet’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/resautonet/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/resautonet/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang: error: unsupported option '-fopenmp'
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘resautonet’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/resautonet/old/resautonet.Rcheck/resautonet’

RforProteomics

Version:
Source code: ???
URL: https://tidyselect.r-lib.org, https://github.com/r-lib/tidyselect
BugReports: https://github.com/r-lib/tidyselect/issues
Number of recursive dependencies: 0

Run revdep_details(,"") for more info


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
mvtnorm 1.0-11 1.0-12              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘msdata’, ‘synapterdata’


  There are binary versions available but the source versions are later:
        binary source needs_compilation
fansi    0.4.0  0.4.1              TRUE
mvtnorm 1.0-11 1.0-12              TRUE
stringi  1.4.3  1.4.4              TRUE

  Binaries will be installed


installing the source packages ‘msdata’, ‘synapterdata’

rstap

Version: 1.0.3
Source code: https://github.com/cran/rstap
URL: https://biostatistics4socialimpact.github.io/rstap
BugReports: https://github.com/biostatistics4socialimpact/rstap/issues
Date/Publication: 2019-02-06 20:30:03 UTC
Number of recursive dependencies: 100

Run revdep_details(,"rstap") for more info

R CMD check timed out
checking installed package size ... NOTE installed size is 8.1Mb sub-directories of 1Mb or more: libs 6.7Mb
checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘loo’ All declared Imports should be used.
checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘rstanarm’

sarima

Version: 0.8.1
Source code: https://github.com/cran/sarima
Date/Publication: 2019-05-12 23:30:03 UTC
Number of recursive dependencies: 71

Run revdep_details(,"sarima") for more info

checking whether package ‘sarima’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/sarima/new/sarima.Rcheck/00install.out’ for details.

* installing *source* package ‘sarima’ ...
** package ‘sarima’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/sarima/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/sarima/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c Kalman0b.cpp -o Kalman0b.o
clang: error: unsupported option '-fopenmp'
make: *** [Kalman0b.o] Error 1
ERROR: compilation failed for package ‘sarima’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/sarima/new/sarima.Rcheck/sarima’

* installing *source* package ‘sarima’ ...
** package ‘sarima’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/sarima/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/sarima/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c Kalman0b.cpp -o Kalman0b.o
clang: error: unsupported option '-fopenmp'
make: *** [Kalman0b.o] Error 1
ERROR: compilation failed for package ‘sarima’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/sarima/old/sarima.Rcheck/sarima’

scater

Version: 1.12.2
Source code: https://github.com/cran/scater
URL: http://bioconductor.org/packages/scater/
BugReports: https://support.bioconductor.org/
Date/Publication: 2019-05-24
Number of recursive dependencies: 203

Run revdep_details(,"scater") for more info

R CMD check timed out
checking installed package size ... NOTE installed size is 6.5Mb sub-directories of 1Mb or more: doc 4.9Mb

simputation

Version: 0.2.3
Source code: https://github.com/cran/simputation
URL: https://github.com/markvanderloo/simputation
BugReports: https://github.com/markvanderloo/simputation/issues
Date/Publication: 2019-05-20 17:10:03 UTC
Number of recursive dependencies: 96

Run revdep_details(,"simputation") for more info

checking whether package ‘simputation’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/simputation/new/simputation.Rcheck/00install.out’ for details.

* installing *source* package ‘simputation’ ...
** package ‘simputation’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c R_register_native.c -o R_register_native.o
clang: error: unsupported option '-fopenmp'
make: *** [R_register_native.o] Error 1
ERROR: compilation failed for package ‘simputation’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/simputation/new/simputation.Rcheck/simputation’

* installing *source* package ‘simputation’ ...
** package ‘simputation’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC  -Wall -g -O2   -Wall -pedantic -fno-common -mtune=core2  -O3 -c R_register_native.c -o R_register_native.o
clang: error: unsupported option '-fopenmp'
make: *** [R_register_native.o] Error 1
ERROR: compilation failed for package ‘simputation’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/simputation/old/simputation.Rcheck/simputation’

SpaDES.core

Version: 0.2.7
Source code: https://github.com/cran/SpaDES.core
URL: https://spades-core.predictiveecology.org/, https://github.com/PredictiveEcology/SpaDES.core
BugReports: https://github.com/PredictiveEcology/SpaDES.core/issues
Date/Publication: 2019-11-25 17:00:06 UTC
Number of recursive dependencies: 170

Run revdep_details(,"SpaDES.core") for more info

R CMD check timed out
checking installed package size ... NOTE installed size is 5.4Mb sub-directories of 1Mb or more: doc 1.4Mb R 3.0Mb

TitanCNA

Version: 1.22.0
Source code: https://github.com/cran/TitanCNA
URL: https://github.com/gavinha/TitanCNA
Date/Publication: 2019-05-02
Number of recursive dependencies: 78

Run revdep_details(,"TitanCNA") for more info

R CMD check timed out
checking whether package ‘TitanCNA’ can be installed ... WARNING Found the following significant warnings: Warning: replacing previous import ‘GenomicRanges::shift’ by ‘data.table::shift’ when loading ‘TitanCNA’ Warning: replacing previous import ‘IRanges::collapse’ by ‘dplyr::collapse’ when loading ‘TitanCNA’ Warning: replacing previous import ‘data.table::last’ by ‘dplyr::last’ when loading ‘TitanCNA’ Warning: replacing previous import ‘GenomicRanges::union’ by ‘dplyr::union’ when loading ‘TitanCNA’ Warning: replacing previous import ‘IRanges::slice’ by ‘dplyr::slice’ when loading ‘TitanCNA’ Warning: replacing previous import ‘GenomeInfoDb::intersect’ by ‘dplyr::intersect’ when loading ‘TitanCNA’ Warning: replacing previous import ‘GenomicRanges::setdiff’ by ‘dplyr::setdiff’ when loading ‘TitanCNA’ Warning: replacing previous import ‘data.table::first’ by ‘dplyr::first’ when loading ‘TitanCNA’ Warning: replacing previous import ‘IRanges::desc’ by ‘dplyr::desc’ when loading ‘TitanCNA’ Warning: replacing previous import ‘data.table::between’ by ‘dplyr::between’ when loading ‘TitanCNA’ Warning: replacing previous import ‘dplyr::select’ by ‘VariantAnnotation::select’ when loading ‘TitanCNA’ See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/TitanCNA/new/TitanCNA.Rcheck/00install.out’ for details.
checking for missing documentation entries ... WARNING Undocumented code objects: ‘plotIdiogram.hg38’ All user-level objects in a package should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual.
checking installed package size ... NOTE installed size is 7.7Mb sub-directories of 1Mb or more: data 1.7Mb extdata 4.9Mb
checking R code for possible problems ... NOTE ... HaplotypeDepth.mean.symmetric HaplotypeDepth.sum HaplotypeDepth.sum.symmetric HaplotypeFraction HaplotypeFraction.symmetric HaplotypeRatio HaplotypeRatio.1 HaplotypeRatio.2 head Length.snp. lines loess logR_Copy_Number LogRatio lowess lpolygon lsegments MajorCN Median_logR Median_Ratio MinorCN mtext na.omit nonRef par phasedAlleleFraction phasedCount phasedCount.haploSymmetric phaseSet phaseSet.aggr pileup PileupParam plot points predict queryHits read.delim rowRanges rowRanges<- Sample scanBamFlag ScanBamParam scanBcf seq.info SNPs Start Start_Position.bp. Start.snp Start.telo subjectHits tail text TITAN_call TITANcall TITANstate tumDepth uniroot unstrsplit write.table xtabs Consider adding importFrom("graphics", "abline", "axis", "lines", "mtext", "par", "plot", "points", "text") importFrom("methods", "as") importFrom("stats", "approxfun", "dunif", "loess", "lowess", "na.omit", "predict", "uniroot", "xtabs") importFrom("utils", "head", "read.delim", "tail", "write.table") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods').
checking Rd files ... NOTE prepare_Rd: correctCN.Rd:51-53: Dropping empty section \details
checking Rd cross-references ... NOTE Packages unavailable to check Rd xrefs: ‘HMMcopy’, ‘list’

weibulltools

Version: 1.0.1
Source code: https://github.com/cran/weibulltools
Date/Publication: 2019-01-29 16:10:03 UTC
Number of recursive dependencies: 108

Run revdep_details(,"weibulltools") for more info

checking whether package ‘weibulltools’ can be installed ... ERROR Installation failed. See ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/weibulltools/new/weibulltools.Rcheck/00install.out’ for details.

* installing *source* package ‘weibulltools’ ...
** package ‘weibulltools’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/weibulltools/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/weibulltools/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang: error: unsupported option '-fopenmp'
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘weibulltools’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/weibulltools/new/weibulltools.Rcheck/weibulltools’

* installing *source* package ‘weibulltools’ ...
** package ‘weibulltools’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -std=gnu++11 -std=c++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/weibulltools/Rcpp/include" -I"/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/library.noindex/weibulltools/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -arch x86_64 -ftemplate-depth-256 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang: error: unsupported option '-fopenmp'
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘weibulltools’
* removing ‘/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/weibulltools/old/weibulltools.Rcheck/weibulltools’

XBSeq

Version: 1.16.0
Source code: https://github.com/cran/XBSeq
URL: https://github.com/Liuy12/XBSeq
Date/Publication: 2019-05-02
Number of recursive dependencies: 130

Run revdep_details(,"XBSeq") for more info

R CMD check timed out
checking whether the namespace can be loaded with stated dependencies ... NOTE ``` Warning: no function found corresponding to methods exports from ‘XBSeq’ for: ‘conditions’, ‘conditions<-’, ‘dispTable’

A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file. ```
checking R code for possible problems ... NOTE ... ‘conditions’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/XBSeq/new/XBSeq.Rcheck/00_pkg_src/XBSeq/R/core_functions.R:106) estimateSCV,XBSeqDataSet: no visible global function definition for ‘conditions’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/XBSeq/new/XBSeq.Rcheck/00_pkg_src/XBSeq/R/core_functions.R:107) estimateSCV,XBSeqDataSet: no visible global function definition for ‘dispTable<-’ (/Users/lionel/Desktop/tidyselect/revdep-all/dplyr/checks.noindex/XBSeq/new/XBSeq.Rcheck/00_pkg_src/XBSeq/R/core_functions.R:108) Undefined global functions or variables: ..count.. assay assay<- assays baseMean coefficients complete.cases conditions cor data DataFrame ddelap dispTable dispTable<- dnbinom dpois formula Gamma glm Group log2FoldChange median optim p.adjust pbeta predict qbeta quantile rnbinom Sample scvBiasCorrectionFits SummarizedExperiment Consider adding importFrom("stats", "coefficients", "complete.cases", "cor", "dnbinom", "dpois", "formula", "Gamma", "glm", "median", "optim", "p.adjust", "pbeta", "predict", "qbeta", "quantile", "rnbinom") importFrom("utils", "data") to your NAMESPACE file.

lionel-/selectr documentation built on March 14, 2024, 10:04 p.m.

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lionel-/selectr Select from a Set of Strings

revdep/dplyr/failures.md In lionel-/selectr: Select from a Set of Strings

airGR

In both

Installation

Devel

CRAN

annotation

Error before installation

Devel

CRAN

annotatr

Error before installation

Devel

CRAN

bioCancer

Error before installation

Devel

CRAN

BiocOncoTK

Error before installation

Devel

CRAN

brunnermunzel

In both

Installation

Devel

CRAN

CAGEWorkflow

Error before installation

Devel

CRAN

Cardinal

In both

Installation

Devel

CRAN

CATALYST

In both

Name: runDR

Title: Perform dim. reduction on a 'daFrame'

Aliases: runDR runDR,daFrame-method

** Examples

PCA on all cells

UMAP on 1000 random cells

ChIPseeker

Error before installation

Devel

CRAN

cicero

In both

CINdex

Error before installation

Devel

CRAN

clustermq

In both

codemetar

In both

corrcoverage

In both

Installation

Devel

CRAN

DepthProc

In both

Installation

Devel

CRAN

DiffBind

In both

downscaledl

In both

Installation

Devel

CRAN

fastLink

In both

Installation

Devel

lionel-/selectr
Select from a Set of Strings

revdep/dplyr/failures.md
In lionel-/selectr: Select from a Set of Strings