niceglmer: Lisa's GLMER Regression Table Reporting Function

In lisaerein/nicereg: Suite of functions to format regression results

Description

This function creates a nice looking table of regression results for a lmer or glmer (lme4 package) model. Input either a lmer/glmer object or dataframe, outcome variable, vector of covariates, random effects statement, model family, and type of analysis (univariate or multiple regression). The function returns a dataframe of formatted regression results and prints the results table using kable or htmlTable.

Usage

niceglmer(fit = NA, df = NA, family = NA, covs = NA, out = NA,
  random = NA, optimizer = "bobyqa", regtype = "multi", exp = NA,
  estname = NA, intercept = FALSE, refcat = FALSE, labels = NA,
  est.dec = 2, ci.dec = 2, pval.dec = 3, color = "#EEEEEE",
  kable = TRUE, htmlTable = FALSE, title = "", footer = TRUE)

Arguments

fit	glmer model object [fit or family/covs/out/random are REQUIRED].
df	Dataframe [fit or family/covs/out/random REQUIRED].
family	Character. Model family name in quotes ("guassian", "binomial", "poisson") [fit or family/covs/out/random are REQUIRED].
covs	Character. Vector of covariates to include in model [fit or family/covs/out/random are REQUIRED].
out	Character. Outcome for regression model [fit or family/covs/out/random are REQUIRED].
random	Character. Random effects statement to add to formula, ex. "(1|study_id)" for random intercept by study_id. [fit or family/covs/out/random are REQUIRED].
optimizer	Character. Option to pass to glmerControl. Default is "bobyqa".
regtype	Logical. Should the covariates be run separately ("uni") or together in a multiple regression model ("multi") [fit or family/covs/out/id/corstr are REQUIRED].
exp	Logical. Option to exponentiate coefficients and CI's. Default is NA (estimates exponentiated for binomial and poisson models by default).
estname	Character. Label for regression estimate. Default is NA (program will choose a reasonable name depending on model type).
intercept	Logical. If TRUE the intercept will be included in the table (muliple regression only). Default is FALSE.
refcat	Logical. If TRUE the table will create a separate line for the reference category. Default is FALSE.
labels	Character vector. Covariate labels in same order as covs. Default is NA (variable names are used).
est.dec	Numeric. Number of decimal places for estimates. Default is 2.
ci.dec	Numeric. Number of decimal places for 95 percent confidence interval. Default is 2.
pval.dec	Numeric. Number of decimal places for pvalues. Must be an integer from 1 to 4. Default is 3.
color	Character. Color to use for htmlTable striping. Default is "#EEEEEE" (light grey). Use "white" for no striping.
kable	Logical. If TRUE, table will be formatted using the kable packge. Default is TRUE.
htmlTable	Logical. If TRUE, the table will be printed using htmlTable. Default is FALSE.
title	Character. Optional title above table. Default is "".
footer	Logical. If TRUE, table will include a footnote with model details, nobs, R2. Default is TRUE.

lisaerein/nicereg documentation built on July 4, 2020, 9:04 p.m.