Man pages for lishensuo/M2D
find Molecule(s) to Disease by reverse transcriptome
| demo_gsea_df_all | demo_gsea_df_all |
| egSymbols | egSymbols |
| find_disease_pw | find enriched GO_BP pathways related disease |
| find_disease_pw_result | find_disease_pw_result |
| get_Formula | get two types of Formula for disease |
| get_Formula_result | get_Formula_result |
| GOBP_uncor | select top n uncorrelated GOterms from given GOBP pathways |
| goegs | goegs |
| gsea_disease_set | gsea enrichment analysis for disease up/down geneset to... |
| gsea_disease_set_result | gsea_disease_set_result |
| hsGO_BP | hsGO_BP |
| merge_pw_deg | merge disease and molecules degs for the disease-enrciehed... |
| merge_pw_deg_result | merge_pw_deg_result |
| pipe | Pipe operator |
| score_RRS | calculate RRS(reverse regulated score) of molecules against... |
| score_RRS_result | score_RRS_result |
| vis_bar_double_enrich | barplot: up/down disease geneset single/both enrich reusult |
| vis_bell_term | bell plot: tran gene; one molecule, all pathways |
| vis_formula_gsea_chord | chordDiagram: selected molecules of formula2 aganinst disease... |
| vis_formula_RRS_chord | chordDiagram: selected molecules of formula2 aganinst... |
| vis_pw_cor_ph | pheatmap of selected GOBP pathways' correlation matrix |
| vis_pw_stat_bar | barplot of go term total size and affected size |
| vis_pw_wt_radar | ggradar plot: importance weight of disease related pathways |
| vis_tern_all | ggtern plot : one molecule, all pathways |
| vis_tern_one | ggtern plot : one molecule, one pathway |
