merge_pw_deg: merge disease and molecules degs for the disease-enrciehed...
In lishensuo/M2D: find Molecule(s) to Disease by reverse transcriptome

Description Usage Arguments Value Examples

merge disease and molecules degs for the disease-enrciehed pathways

1	merge_pw_deg(m2dObj, disease_pw, disease_pvalue = 0.05)

`m2dObj`	raw m2d object
`disease_pw`	result of find_disease_pw()
`disease_pvalue`	deg cutoff for disease degs

merged degs of disease and molecules

library(M2D)
dir_disease <- system.file("extdata",
  "demo_BRCA_disease.csv",
  package = "M2D"
)
disease <- read.csv(dir_disease)
dir_molecule <- system.file("extdata",
  "demo_molecules_321_12320.csv",
  package = "M2D"
)
molecules <- data.table::fread(dir_molecule,
  data.table = FALSE
) %>%
  tibble::column_to_rownames("V1")
m2dObj <- list(
  disease = disease,
  molecule = molecules
)
data("find_disease_pw_result")
merge_pw_degs <- merge_pw_deg(m2dObj,
  disease_pw = find_disease_pw_result$term_df
)
head(merge_pw_degs)