seg2score: Function for generating common segment markers across all...

In liu3zhenlab/genomap: An R Package for manipulation of genetic data

Description

read genotyping segmentation result and divide each segment into multiple smaller segments. Basically, breakpoints from all individuals were used to split original segments.

Usage

seg2score(seg.input, segscore.output, missing.data.code = NULL, binsize = 1e+06)

Arguments

seg.input	input data that are the result from seggenoXX moduless
segscore.output	output file for genotyping data
missing.data.code	missing data code to replace NA. default=NULL.
binsize	bin size for facilitating computation, default = 1000000. NOT recommended to change

Value

genotyping table for individuals

Author(s)

Sanzhen Liu

See Also

seggenoF2

Examples

seg2score(seg.input = "", segscore.output = "")

liu3zhenlab/genomap documentation built on Jan. 10, 2021, 12:08 a.m.