zimed: The effect decomposition of mediation analysis for...
In liudoubletian/ZIMED: The effect decomposition of mediation analysis for zero-inflated models in microbiome data
zimed R Documentation
The effect decomposition of mediation analysis for zero-inflated models in microbiome data
Description
The effect decomposition of mediation analysis for zero-inflated models in microbiome data
Usage
zimed(M_mat, Treat, Outcome, method, ci.method)
Arguments
M_mat
a data frame or matrix of the microbiome count data. Rows of the matrix represent samples and columns are the taxa
Treat
a binary vector of group indicators
Outcome
a continuous outcome
method
methods for testing the H0 hypothesis, including joint, HDMT or DACT
ci.method
methods for calculating confidence interval, including bootstrap or delta
Value
NIE the estimated natural indirect effect
NIE.p the calculated p value for NIE
NIE.ci the calculated confidence interval for NIE
NIEA the estimated natural indirect effect through changes of abundance
NIEA.p the calculated p value for NIEA
NIEA.ci the calculated confidence interval for NIEA
NIEP the estimated natural indirect effect through changes of absence/presence
NIEP.p the calculated p value for NIEP
NIEP.ci the calculated confidence interval for NIEP
liudoubletian/ZIMED documentation built on April 11, 2022, 12:05 a.m.
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| zimed | R Documentation |
The effect decomposition of mediation analysis for zero-inflated models in microbiome data
Description
The effect decomposition of mediation analysis for zero-inflated models in microbiome data
Usage
zimed(M_mat, Treat, Outcome, method, ci.method)
Arguments
M_mat |
a data frame or matrix of the microbiome count data. Rows of the matrix represent samples and columns are the taxa |
Treat |
a binary vector of group indicators |
Outcome |
a continuous outcome |
method |
methods for testing the H0 hypothesis, including joint, HDMT or DACT |
ci.method |
methods for calculating confidence interval, including bootstrap or delta |
Value
NIE the estimated natural indirect effect
NIE.p the calculated p value for NIE
NIE.ci the calculated confidence interval for NIE
NIEA the estimated natural indirect effect through changes of abundance
NIEA.p the calculated p value for NIEA
NIEA.ci the calculated confidence interval for NIEA
NIEP the estimated natural indirect effect through changes of absence/presence
NIEP.p the calculated p value for NIEP
NIEP.ci the calculated confidence interval for NIEP
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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