eBay_tree: An method for phylogeny-aware differential abundance...
In liudoubletian/eBay: An empirical bayes approach to normalization
Description
Usage
Arguments
Value
Description
An method for phylogeny-aware differential abundance detection
the eBay incorporates the tree into the normalization process and implement
differential abuance testing.
Usage
1
Arguments
otu.data
the data set where each row was a sample and each column was a taxa,
tree
a phylogenetic tree for otus
test.method
a test including "t" and "wilcoxon"
cutf
the significance level
Value
dif.node the detected differential nodes
p.value the p value for each taxa
liudoubletian/eBay documentation built on Oct. 10, 2020, 8:43 p.m.
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Description Usage Arguments Value
Description
An method for phylogeny-aware differential abundance detection the eBay incorporates the tree into the normalization process and implement differential abuance testing.
Usage
1 |
Arguments
otu.data |
the data set where each row was a sample and each column was a taxa, |
tree |
a phylogenetic tree for otus |
test.method |
a test including "t" and "wilcoxon" |
cutf |
the significance level |
Value
dif.node the detected differential nodes
p.value the p value for each taxa
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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