seqem_tetraploid: SeqEM method to estimate parameters for tetraploid...
In liuhyustc/StatComp21017: Project for 'statistical computing' course
Description
Usage
Arguments
Value
Examples
View source: R/StatComp21017R.R
Description
EM algorithm is used to estimate nucleotide-read error and MAF
Usage
1
seqem_tetraploid(reads, iters, epsilon)
Arguments
reads
a data set for read sequences
iters
maximum iterations
epsilon
convergence criterion
Value
estimation of alpha and p
Examples
1
2
3
4
5
## Not run:
sample <- sample_tetraploid(10,10,0.01,0.1)
seqem_tetraploid(sample, 100, 1e-8)
## End(Not run)
liuhyustc/StatComp21017 documentation built on Dec. 23, 2021, 11:16 p.m.
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Description Usage Arguments Value Examples
View source: R/StatComp21017R.R
Description
EM algorithm is used to estimate nucleotide-read error and MAF
Usage
1 | seqem_tetraploid(reads, iters, epsilon)
|
Arguments
reads |
a data set for read sequences |
iters |
maximum iterations |
epsilon |
convergence criterion |
Value
estimation of alpha and p
Examples
1 2 3 4 5 | ## Not run:
sample <- sample_tetraploid(10,10,0.01,0.1)
seqem_tetraploid(sample, 100, 1e-8)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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